Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01812 ATGGAAATGGAGGACCATCATCAGTATGGCATCGCTGATCTGAGGCAGCTGGTGAACGGCCCACGGCCCACCCATTTCCCCGCCATGCCTCCGCAGCCCAAGGCGGAGCTGTTCCCAGGCGGCGGCGGCGGCCACCCAAACCTGCAGGCGGCGACACAACAACACTACGAGATGATGATGTTTGGTCGTCAAGTGGCGGACATAATACCTCGTTGTCTTCACGACTTCGCCCCCACTGATTCCGCCACCAACATCGCCGTTGCCACTCCCACCACCACCACTAGCGCCTCTACTCCTCCGCTTAGTTGCTTAGAGGCCGAGACCGCAGGATGCATCGGTGGAGACGCCTCCACTGGAAGATGGCCCAGACAAGAGACTCTCACTCTCCTTGAGATCAGATCTCGCCTCGACTCTAAATTCAAAGAGGCTAATCAAAAAGGCCCCCTATGGGTTGAAGTTTCTAGGATCATGTCTGAAGAACATGGATATCAAAGGAGTGGGAAGAAGTGCAGGGAGAAGTTCGAGAACCTATACAAATATTACAAGAAGACAAAGGAAGGGAAAGCAGGAAGACAAGATGGGAAGCATTACAGGTTCTTTCGTCAACTTGAAGCCTTATATGGTGAAAACAGTAACCAAGCCTCGGTGCCAGAAACCAATTTTGGCAGTGGTAGCCTTCGTTTCCACACAAGCAGCCACAACAACCCTTCTCAAACAAATCAAGAAATGTTTCAGTCTCAGAAGCATTGTGACAGCCTCAGCCTCACCAACTCCACTGATTTGGACACGTCATCATCGGACGACAATGATCAGAATAGCACTGGCGGGGGACTCAAGGACAATGACTCCATGGAGAAGAGGAGAAAGAGGGTGAGTGGAAGAAGTTGGAAGGTGAAGATAAAGGACTTCATTGACTCACAGATGAGGAAGCTGGTGGAGAAGCAAGAGGAGTGGTTGGATAAACTCACAAAGACACTGGAACAGAAGGAGAAGGAGAGGGTGTTAAGAGAAGAAGAGTGGAGGAGACAAGAAGCTGCAAGGTTGGAGAGGGAACACAAATTTTGGGCCAAAGAGAGAGCATGGATTGAAGCAAGGGATGCTGCTCTAATGGAGGCTTTGCACAAATTAACCGGAAACGGGATCATAAAGAGTACTCATTCTCCTGATGGTTTGATGGTAACTGGAATTCAGAACCACAGTGAAAACCAGAATGAAGATGGGAGTGAAATACTAAATAGCACTACTGCCAGAGGTGCTGAAAGCTGGACAGAATCTGAGATTGCAAGGCTTCAACAGTTGAGAGCTGAGATGGAGACAAGGTATATGCAAAGTGGGTGTTCAGAAGAGGTTATGTGGGAGGAAATAGCTACCAAAATGGCTTGTTTTGGTTACGAAAGGAGTGCTGTGGTCTTCAAAGAGAAATGGGAGAGTATAAGTAACTATGCAAGGAGTGTCAAGGATGGAAGCAAGAAGCGCAAGGAAGACTCAAGAAGTTGTTTTTACTTCGATAACAGTGACCAATCTTCTCTGTATAACCAAGGAGGTGCCTATTGTGATATCAACGATCAAAGGCACAAGACTGGGAGGCTGCAAACAAATGATGGCTCTTCACCTTCCAATTCAAATGTTGGAAATACAGTTGCGGTTGATAACTGCTTTCCCTTCTTGATGACTGAGAGTGGAAATTTGTGGGAGAACTATAGCTTAAAGGTTAATAAAGCAAGCCAAAACCAGTGA 1737 0.4767 MEMEDHHQYGIADLRQLVNGPRPTHFPAMPPQPKAELFPGGGGGHPNLQAATQQHYEMMMFGRQVADIIPRCLHDFAPTDSATNIAVATPTTTTSASTPPLSCLEAETAGCIGGDASTGRWPRQETLTLLEIRSRLDSKFKEANQKGPLWVEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGENSNQASVPETNFGSGSLRFHTSSHNNPSQTNQEMFQSQKHCDSLSLTNSTDLDTSSSDDNDQNSTGGGLKDNDSMEKRRKRVSGRSWKVKIKDFIDSQMRKLVEKQEEWLDKLTKTLEQKEKERVLREEEWRRQEAARLEREHKFWAKERAWIEARDAALMEALHKLTGNGIIKSTHSPDGLMVTGIQNHSENQNEDGSEILNSTTARGAESWTESEIARLQQLRAEMETRYMQSGCSEEVMWEEIATKMACFGYERSAVVFKEKWESISNYARSVKDGSKKRKEDSRSCFYFDNSDQSSLYNQGGAYCDINDQRHKTGRLQTNDGSSPSNSNVGNTVAVDNCFPFLMTESGNLWENYSLKVNKASQNQ 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01812 578 CDD GT1 422 486 - -
Gma19g01812 578 Coils Coil 312 339 - -
Gma19g01812 578 MobiDBLite consensus disorder prediction 211 291 - -
Gma19g01812 578 Gene3D - 121 183 - -
Gma19g01812 578 Gene3D - 422 483 - -
Gma19g01812 578 SMART sant 418 481 IPR001005 -
Gma19g01812 578 SMART sant 117 180 IPR001005 -
Gma19g01812 578 CDD GT1 120 185 - -
Gma19g01812 578 Pfam Myb/SANT-like DNA-binding domain 120 206 IPR044822 -
Gma19g01812 578 Pfam Myb/SANT-like DNA-binding domain 421 506 IPR044822 -
Gma19g01812 578 ProSiteProfiles Myb-like domain profile. 421 479 IPR001005 -
Gma19g01812 578 PANTHER - 18 569 - -
Gma19g01812 578 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 18 569 - -
Gma19g01812 578 MobiDBLite consensus disorder prediction 211 279 - -
Gma19g01812 578 ProSiteProfiles Myb-like domain profile. 113 178 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01812 Gma-Chr19 47365384 47367857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01812 1 573 Trihelix Transcription Factor Family AT5G03680 44.695 5.51e-142 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gma19g01812 Myb_DNA-bind_4 6.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01812 - - gmx:100813245 1115.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01812 19 47365384 47367857 Gma19g01812 19 47365384 47367857 ECH
Gma19g01812 19 47365384 47367857 Gma03g01764 03 43721794 43724328 GST
Gma19g01812 19 47365384 47367857 Gma10g00616 10 6582442 6585520 PCT
Gma19g01812 19 47365384 47367857 Gma02g01922 02 44520114 44520924 PCT
Gma10g00616 10 6582442 6585520 Gma19g01812 19 47365384 47367857 PCT
Gma02g01922 02 44520114 44520924 Gma19g01812 19 47365384 47367857 PCT