Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01793 ATGGATTGGCATCATGGCACAAAACCATTTGTTCCTCGGCCAGAGACCTTAAGCTTCTTCTACAACTATGACAACAACAACTCATATCCAGGAGTGGAAGTGAAACAAGCGGCATTGATGGAGACAGGAGAAAGGTCGGTTCCGGCAATGGACCGTGGAAACAAAGAGAAGAAGAAGCGGTTAACAAATAACCAGATAGAGTTATTGGAGAGGAGTTTTCAGGAGGAGATAAAGTTGGACCCTGAAAGGAAGATGAAGCTTTCGAGGGAGCTAGGTCTGCAGCCTCGCCAAATCGCTGTTTGGTTCCAAAATAGACGTACAAGGTGGAAGGCCAAGCAGCTTGAGCACTTGTACGATATGCTTAAACACCAATATGATGTCGTCTCCAACGAAAAGCAGAAGCTTCAAGAAGAGGTTATTAAGTTGAAGGCAATGCTAAGTAAACAGCAAGGTTATTGGACGCAAAAATTTGGAGGTTATACAGAAATATCTGGGGAAGAAACAGTAGAAAGCACGTCAGAGGGTCTAAGGGGAAAGAGTAACATTGAGCATGTTGCAGATCAAGGCTACTGTTCTTTCGCTGTGGAGGATTATAACACCACTGTTTCACTGCCTCACTGCCACTGGCCAGTTGTGCCTTATTAG 645 0.4465 MDWHHGTKPFVPRPETLSFFYNYDNNNSYPGVEVKQAALMETGERSVPAMDRGNKEKKKRLTNNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLEHLYDMLKHQYDVVSNEKQKLQEEVIKLKAMLSKQQGYWTQKFGGYTEISGEETVESTSEGLRGKSNIEHVADQGYCSFAVEDYNTTVSLPHCHWPVVPY 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01793 214 Gene3D - 49 119 - -
Gma19g01793 214 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Gma19g01793 214 SUPERFAMILY Homeodomain-like 45 114 IPR009057 -
Gma19g01793 214 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Gma19g01793 214 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Gma19g01793 214 Pfam Homeodomain 55 110 IPR001356 GO:0003677
Gma19g01793 214 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 211 IPR045224 GO:0003700
Gma19g01793 214 SMART HOX_1 54 116 IPR001356 GO:0003677
Gma19g01793 214 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 211 - -
Gma19g01793 214 Coils Coil 111 145 - -
Gma19g01793 214 Pfam Homeobox associated leucine zipper 112 146 IPR003106 GO:0006355|GO:0043565
Gma19g01793 214 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Gma19g01793 214 CDD homeodomain 55 113 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01793 Gma-Chr19 47160909 47162670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01793 7 146 Homeobox Transcription Factor Family AT2G36610 46.341 1.32e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma19g01793 Homeodomain 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01793 - - gmx:100807872 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01793 19 47160909 47162670 Gma19g01793 19 47160909 47162670 ECH
Gma19g01793 19 47160909 47162670 Gma03g01741 03 43503463 43505284 GST
Gma10g00594 10 6235080 6237197 Gma19g01793 19 47160909 47162670 PCT
Gma13g01284 13 27230177 27232157 Gma19g01793 19 47160909 47162670 PCT