Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01782 ATGCGGGGTGGTGTTTCCCTGTTGTTGGCGTTAGCCTCCGTGGCGGCGGCGGCGACGGTGTCGTGCGGTGGTTTGGCGGGGACTTTTCTTCCTCTGGAACGGGCCATTCCTCTGAACCAGCAAGTGGAGCTGGAGGCGCTGAGAGCTCGCGACAGAGCACGCCACGGTCGAATCTTGCAAGGTGTCGTCGGTGGCGTCGTAGACTTCTCCGTCCAAGGAACCTCCGATCCTTACTTCGTTGGGTACGGGTTGTATTTTACGAAAGTGAAGTTGGGATCCCCTGCGAAAGAGTTTTACGTTCAGATTGATACTGGAAGTGACATCTTGTGGATAAATTGCATAACTTGCAGTAATTGCCCTCATTCTAGTGGATTGGGGATTGAGCTTGATTTCTTTGACACGGCCGGCTCGTCCACTGCTGCGCTTGTTTCCTGTGGGGACCCGATATGTTCGTATGCGGTTCAAACTGCGACAAGTGAATGCTCTTCTCAGGCTAATCAGTGCAGCTACACTTTTCAGTATGGGGATGGAAGTGGGACTACTGGTTATTATGTTTCTGATACAATGTATTTTGACACGGTCCTCCTCGGACAGTCTGTGGTTGCTAACTCTTCATCCACCATCATTTTTGGGTGTAGCACCTACCAGTCTGGGGATTTGACCAAGACAGATAAAGCAGTTGATGGAATTTTTGGGTTTGGCCCTGGTGCTCTATCTGTTATATCACAATTGTCATCACGGGGTGTAACACCCAAAGTGTTCTCTCATTGCTTAAAAGGAGGAGAGAACGGAGGAGGCGTGCTAGTTCTTGGTGAAATTTTGGAACCAAGTATTGTTTATAGTCCACTTGTCCCATCACAGCCTCATTACAACTTAAATCTTCAGAGCATTGCTGTCAATGGACAACTTCTCCCAATTGATTCAAATGTATTTGCAACAACTAACAATCAAGGAACAATAGTTGACTCTGGCACAACATTGGCATACCTTGTTCAAGAAGCTTACAATCCTTTTGTCAAAGCTATAACTGCTGCTGTGTCACAGTTTTCAAAACCCATTATTTCAAAAGGAAACCAGTGTTATCTGGTATCAAACAGCGTAGGTGATATATTTCCTCAAGTCAGTTTAAACTTCATGGGCGGAGCATCTATGGTTTTGAATCCAGAACATTACCTCATGCATTATGGTTTCCTTGATGGTGCTGCAATGTGGTGCATTGGCTTCCAAAAAGTGGAGCAGGGATTCACAATTTTAGGAGATCTTGTCCTAAAAGATAAGATATTTGTATATGACTTAGCTAATCAACGAATTGGATGGGCCGATTATGATTGTTCCTTGTCTGTGAACGTCTCTCTGGCTACCAGCAAGAGCAAGGATGCATACATCAACAATTCAGGACAGATGAGTGCGAGCTGCTCCCACATAGGCACTTTCTCCAAGTTGTTAGCTGTAGGCATTGCTGCTTTCCTTGTGCACATAATAGTTTTCATGGAGTGCCAATTTTTCGAGAAGAAGAAGAAGAAGAATCCCCTGCGGTCGCGCTCTCTCTCTCCTTCTCTACTCCTCCTCTGGTCATCAGATTCATCATCATCATCCATGGCGGTTCATCCGTCGGTCGCCGCCGCTCCGGCGTCGCTCTATGTCGGCGACCTCCACCCCGACGTCTCCGACAGCCACCTCGTCGACGCATTCTCCGAGTTCAAGAGCCTCGCGTCTGTTCGCGTCTGCAAAGACTCCTCCACGGGGAAATCCCTCTGTTACGGTTACCTCAACTTCGTTTCCCCTCAAGACGCAATTCGTGCAATCGAGCTGAAAAATAACTCCACGCTTAATGGGAAAGCGATGAGGGTGATGTGGTCGCGTCGTGATCCTGATGCGAGGAAAAGCGCTATAGGGAACTTGTTTGTTAAGAACTTACccgaatcgatagataatgctggactgcaagatatcttcaaaaaatacgggaatattttgtccagcaaagttgtcacgtcTGAGGATGGGAAGAGCAAAGGATACGGCTTTGTTCAATTTGAATCAGAAGAATCTTCGAAAGTTGCTATCGAGAAGCTGAATGGCTATACTGTTGCTGATAAGGAGTTATATGTTGGGAAGTTTGTCAAAAAAAGTGATCGCATTTTGCCTGGCCCTGATGCTAGATATACAAATTTGTACATGAAGAATTTGGACCTGGATGTTTCAGAAGCAACACTGCAGGAGAAGTTTTCCTCTTTCGGGAAAATTGTTAGCTTGGTTATTGCAAAGGACAACAATGGAATGTCCAAGGGCTTTGGCTTTGTGAACTATGATAACCCAGATGATGCTAAAAAGGCAATGGAAGCAATGAATGGATCACAATTAGGTTCTAAGATTCTGTATGTAGCCAGAGCACAAAAGAAGGCTGAACGTGAGCAGATCTTGCACCACCAATTTGAGGAGAAGCAGAAGGAACAAATCTTGAAATACAAGGGATCGAACATTTATGTGAAGAACATTGATGACCATGTAAGTGATGAAGAACTGAGGGATCATTTTAGTGCATGTGGCACTATAACTTCTGCAAAAATTATGCGAGATGACAAAGGGATAAGTAAAGGGTTTGGCTTTGTCTGCTTCTCCACTCCTGAGGAGGCCAataaagctgtgaacacatttcatgGATTCATGTATCATGGAAAACCACTATATGTTGCTCTTGCTCAGAGGAAAGAGGATAGGAAAGCACAATTGCAGCTCCAGTACGCACAACAACTGGCACGACTATCTGGACCTTCGACTGCCATTATCCCTAGTGGATATCCTCCTTACTACTATGCAGCTAGTGGCGTTATTTCACACGTGCCTCCTCGAGCTGGGCTGATGTATCAACATCTGGCATTGAGACCGGGATGGGGGGCTAATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGGAATTCAATAGCACAGGGAAATACTCACTCTGGTACTTATTTACCACAAGCCCAGCAGATTTCTCAGCCAGTGATCTCTTCAAGAGATTCAAGTACTCAGCAGAGAACCGGACAGGCTAGGTACATACCTAGTGGACGCCAGCGTGATGTGGAAAAAGGATCTGGATCCTCATCTGTTGGTTCAAACTCTGGCAGAGGAGGATCCCAGGGGTCAGAAATGCTGCATAGCTTGCTTGCTGGTGCTGCTCCTGAGCAGCAGAAAGAGATTCTCGGGGAGCATCTTTACATGCTTGTTCATAAACTAAAGCCTACCCTAGCAGCAAAAATAACAGGGATGCTTCTGGAGATGGACAATGGAGAATTACTGCTTCTCCTGGAATCGCCAGAGTCTCTTTCTGCCAAGGTGGAAGAAGCTGTCCAAGTGCTTAAGAACTCTAAGACCAAAGTTTCTGGCCAGGACGTACTTCATTCAAATTTCCTTTCAGCTGAGGTTGCAGTTAACTGA 3507 0.4477 MRGGVSLLLALASVAAAATVSCGGLAGTFLPLERAIPLNQQVELEALRARDRARHGRILQGVVGGVVDFSVQGTSDPYFVGYGLYFTKVKLGSPAKEFYVQIDTGSDILWINCITCSNCPHSSGLGIELDFFDTAGSSTAALVSCGDPICSYAVQTATSECSSQANQCSYTFQYGDGSGTTGYYVSDTMYFDTVLLGQSVVANSSSTIIFGCSTYQSGDLTKTDKAVDGIFGFGPGALSVISQLSSRGVTPKVFSHCLKGGENGGGVLVLGEILEPSIVYSPLVPSQPHYNLNLQSIAVNGQLLPIDSNVFATTNNQGTIVDSGTTLAYLVQEAYNPFVKAITAAVSQFSKPIISKGNQCYLVSNSVGDIFPQVSLNFMGGASMVLNPEHYLMHYGFLDGAAMWCIGFQKVEQGFTILGDLVLKDKIFVYDLANQRIGWADYDCSLSVNVSLATSKSKDAYINNSGQMSASCSHIGTFSKLLAVGIAAFLVHIIVFMECQFFEKKKKKNPLRSRSLSPSLLLLWSSDSSSSSMAVHPSVAAAPASLYVGDLHPDVSDSHLVDAFSEFKSLASVRVCKDSSTGKSLCYGYLNFVSPQDAIRAIELKNNSTLNGKAMRVMWSRRDPDARKSAIGNLFVKNLPESIDNAGLQDIFKKYGNILSSKVVTSEDGKSKGYGFVQFESEESSKVAIEKLNGYTVADKELYVGKFVKKSDRILPGPDARYTNLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNNGMSKGFGFVNYDNPDDAKKAMEAMNGSQLGSKILYVARAQKKAEREQILHHQFEEKQKEQILKYKGSNIYVKNIDDHVSDEELRDHFSACGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMYHGKPLYVALAQRKEDRKAQLQLQYAQQLARLSGPSTAIIPSGYPPYYYAASGVISHVPPRAGLMYQHLALRPGWGANGFAPPARSFQQSPVPAVSNNTRQHRQNRGKLNGNSIAQGNTHSGTYLPQAQQISQPVISSRDSSTQQRTGQARYIPSGRQRDVEKGSGSSSVGSNSGRGGSQGSEMLHSLLAGAAPEQQKEILGEHLYMLVHKLKPTLAAKITGMLLEMDNGELLLLLESPESLSAKVEEAVQVLKNSKTKVSGQDVLHSNFLSAEVAVN 1168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01782 1168 Gene3D Acid Proteases 273 450 IPR021109 -
Gma19g01782 1168 SUPERFAMILY RNA-binding domain, RBD 716 806 IPR035979 GO:0003676
Gma19g01782 1168 SUPERFAMILY Acid proteases 81 447 IPR021109 -
Gma19g01782 1168 CDD RRM1_I_PABPs 545 624 - -
Gma19g01782 1168 PANTHER POLYADENYLATE-BINDING PROTEIN 1068 1153 - -
Gma19g01782 1168 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 544 1144 IPR006515 GO:0003723
Gma19g01782 1168 Gene3D Acid Proteases 69 272 IPR021109 -
Gma19g01782 1168 Gene3D - 503 631 IPR012677 -
Gma19g01782 1168 SUPERFAMILY PABC (PABP) domain 1075 1154 IPR036053 GO:0003723
Gma19g01782 1168 Gene3D - 807 914 IPR012677 -
Gma19g01782 1168 Gene3D - 713 806 IPR012677 -
Gma19g01782 1168 Gene3D - 1069 1149 - -
Gma19g01782 1168 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 1071 1148 IPR002004 GO:0003723
Gma19g01782 1168 CDD RRM2_I_PABPs 631 706 IPR045305 -
Gma19g01782 1168 SMART poly_2 1083 1146 IPR002004 GO:0003723
Gma19g01782 1168 CDD pepsin_A_like_plant 85 444 IPR034161 -
Gma19g01782 1168 CDD RRM4_I_PABPs 825 903 - -
Gma19g01782 1168 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 723 800 IPR000504 GO:0003723
Gma19g01782 1168 PANTHER POLYADENYLATE-BINDING PROTEIN 537 1058 - -
Gma19g01782 1168 MobiDBLite consensus disorder prediction 1051 1071 - -
Gma19g01782 1168 Coils Coil 901 921 - -
Gma19g01782 1168 Pfam Xylanase inhibitor C-terminal 289 440 IPR032799 -
Gma19g01782 1168 Gene3D - 632 712 IPR012677 -
Gma19g01782 1168 SUPERFAMILY RNA-binding domain, RBD 545 711 IPR035979 GO:0003676
Gma19g01782 1168 SMART rrm2_1 827 899 IPR003954 GO:0003676
Gma19g01782 1168 SMART rrm2_1 724 796 IPR003954 GO:0003676
Gma19g01782 1168 SMART rrm2_1 633 705 IPR003954 GO:0003676
Gma19g01782 1168 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 826 903 IPR000504 GO:0003723
Gma19g01782 1168 SUPERFAMILY RNA-binding domain, RBD 823 915 IPR035979 GO:0003676
Gma19g01782 1168 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 632 709 IPR000504 GO:0003723
Gma19g01782 1168 ProSiteProfiles Peptidase family A1 domain profile. 85 440 IPR033121 -
Gma19g01782 1168 Coils Coil 795 815 - -
Gma19g01782 1168 MobiDBLite consensus disorder prediction 973 1042 - -
Gma19g01782 1168 Pfam Xylanase inhibitor N-terminal 85 271 IPR032861 -
Gma19g01782 1168 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 546 615 IPR000504 GO:0003723
Gma19g01782 1168 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 828 896 IPR000504 GO:0003723
Gma19g01782 1168 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 634 702 IPR000504 GO:0003723
Gma19g01782 1168 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 725 792 IPR000504 GO:0003723
Gma19g01782 1168 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Gma19g01782 1168 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 544 622 IPR000504 GO:0003723
Gma19g01782 1168 MobiDBLite consensus disorder prediction 972 1072 - -
Gma19g01782 1168 PANTHER RNA BINDING PROTEIN 1068 1153 - -
Gma19g01782 1168 PANTHER RNA BINDING PROTEIN 537 1058 - -
Gma19g01782 1168 Pfam Poly-adenylate binding protein, unique domain 1079 1143 IPR002004 GO:0003723
Gma19g01782 1168 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Gma19g01782 1168 PRINTS Pepsin (A1) aspartic protease family signature 319 330 IPR001461 GO:0004190|GO:0006508
Gma19g01782 1168 PRINTS Pepsin (A1) aspartic protease family signature 416 431 IPR001461 GO:0004190|GO:0006508
Gma19g01782 1168 SMART rrm1_1 724 796 IPR000504 GO:0003723
Gma19g01782 1168 SMART rrm1_1 827 899 IPR000504 GO:0003723
Gma19g01782 1168 SMART rrm1_1 633 705 IPR000504 GO:0003723
Gma19g01782 1168 SMART rrm1_1 545 618 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01782 Gma-Chr19 47079358 47092238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01782 544 1166 Eukaryotic Initiation Factors Gene Family AT2G36660 54.459 0.0 631
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01782 K13126 - gmx:100779547 1187.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01782 19 47079358 47092238 Gma19g01782 19 47079358 47092238 ECH
Gma19g01782 19 47079358 47092238 Gma03g01732 03 43431304 43435524 GST
Gma19g01782 19 47079358 47092238 Gma10g00582 10 6111759 6116133 PCT
Gma19g01782 19 47079358 47092238 Gma13g01275 13 27113165 27116240 PCT
Gma10g00582 10 6111759 6116133 Gma19g01782 19 47079358 47092238 PCT
Gma13g01275 13 27113165 27116240 Gma19g01782 19 47079358 47092238 PCT