Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01776 ATGGACGCCGCCGTGAAGCCGGAGACGGAATACGCGGCCGTTTCGACGGATCAGCCTCGGAAAGTTTCGGTGGTGAATGGTTACATTGTCTACACTCGCGCCAAGAGGTCACTGGATTCGTGCAACGGTTTTTCAGAACACGCGGAATTGAAGGATAACGCCGAGGTTGAAGTTAAAACGGAGAACGGAGAGTGTGAGAAGCTGAAAAATGAGTCCACAGAGGTGGTTGCGAGGACGCGCAAGCGGAGCCGGCGATCGGCGTTGGAAGCGAAGGTTGAGTGTTGTGATCAGATGGTTGTGAGTGAGACGGAACAAGTAGTTGCGAATGGCGGAAGCGGAATCAACGGTGCATTGGGAGCTCCGAGGAATAAGATGGAGTTGAAGATGTCGAAGAAGATTGTGGTCAACAGGAAGCCTATGACTGTGAAAAAGCTCTTTGATACAGGTTTTCTTGATGGCGTTTCCGTGGTTTACATGGGCGGCATTAAGAAGGCTTCGGGATTACGAGGTGTGATTAGAGATGGGGGAATATTGTGCTCGTGCTGTCTATGCAATGGACGCAGGGTTATTCCACCTTCCCAATTCGAGATCCATGCTTGCAAACAATATAGGAGAGCTGCGCAGTATATTTGCCTCGAAAATGGGAAGAGCCTGCTTGATCTGTTGAGAGCATGCAGGGGAGCTACCCTGCATACTTTGGAGGTGACAGTTCAAAATTTTGTTTGTTCTCCACATGAAGAAAGATACTTTACATGTAAAAGGTGCAAAGGATGTTTCCCTTCTTCGTTTGTGGAAAGAGTGGGGCCTATATGCCGTTCTTGTGTGGAATCAAGGAAGTCTGAAGAAAGTTCAAATAACGTAGTTGGCAAAAGAGTTAGGTCCCCTAGACCAGTGGTTCTTTCCAACCCATCCAGTACTTCTGAGCTGTCTGTCTCTTCACAAGTTAAGAGACACAGGAAGAAAAGAACAAAGGCATCAAAAAGGATTATCTGTTCAAATACTTCCAAGAATGCTTCTGTGGCTGTTCTACCCCGGAAGAAAAATTTGTTGAAGATGAAAAAGAAGTCGCTGTCAGTAAAGTTGAAGTCCCCCAAAAAAACTTTAAATTTGAAATCTAATAAGAGTCAATGGAGGATAACTAAGAAGGATCAGCGATTGCATAAGTTAGTTTTTGAAGAAAATGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCTCGTGGACAGAAATTGCTTGAAGGTTTCAAAATGGGCTCTGGAATTGTTTGTCGATGCTGCAACACTGAGATCAGCCCTTCACAGTTTGAGGTCCATGCAGGCTGGGCTTCTCGCAAGAAACCTTATGCATACATTTACACGTCAAATGGGGTGTCTCTCCATGAGTTGGCAATATCTCTCTCAAAAGATAGAAAATACTCTGCAAAGGACAATGATGATCTATGCATTGTTTGTTGGGATGGTGGTAATCTATTGCTTTGTGATGGATGCCCAAGAGCATTTCATAAAGAATGTGCAGCTCTATCAAGTATTCCACGTGGTGACTGGTACTGCCAATTTTGCCAAAACATGTTCCAGAGAGAAAAGTTTGTGGCGCACAACGCCAATGCTGTGGCAGCTGGAAGGGTTGAAGGAGTTGATCCTATTGAACAGATTGCCAATAGATGCATTCGCATAGTCAAAGACATTGAAGCTGATCTTAGTAGCTGTGCTTTATGCAGGGGTGTTGATTTCAGCAGATCTGGGTTTGGTCCACGCACAATAATACTCTGCGATCAGTGTGAAAAGGAATATCATGTTGGTTGTTTGAGGGATCACAAGATGGCATATTTAAAGGAACTGCCAGAAGGTAATTGGCTTTGTTGCAATGATTGCACAAGAATACACTCTACTTTGGAGAATCTTTTGGTTAAGGGGGCTGAGAGACTCCCTGAATCTCTCTTGGGTGTTATAAAGAAGAAGCAAGAGGAAAAAGGATTAGAACCCATCATTGATGTAAGATGGAGGCTTCTTAATGGCAAAATTGCTTCTCCTGAAACTAGACCATTGCTTTTGGAGGCTGTTTCAATCTTTCATGAATGCTTTAATCCTATAGTTGATGCAGCTAGTGGACGTGACCTTATTCCAGCCATGGTTTATGGGAGGAATGTGCGAGGTCAGGAGTTTGGAGGAATGTATTGTGCATTACTAATAGTCAATTCATCTGTGGTATCTGCGGGCATGCTTAGAATTTTTGGCTCAGATGTTGCTGAACTCCCTTTAGTTGCAACGAGTAATGGGAACCATGGAAAGGGCTACTTCCAAACACTCTTCTCCTGCATCGAGAGGCTGCTGGCTTTCTTGAATGTGAAGAATCTTGTACTGCCAGCTGCAGAAGAAGCAGAATCAATATGGACTGATAAATTTGGGTTTAGCAAGATGAATCCAGATGAGCTCACCAACTATAGAAAGAACTGCCATCAGATGGTAAGTTTCAAAGGGACCAATATGCTGCATAAAATGGTACCTTCGTGTCGGGTCATCAATAATCAATCATGA 2535 0.4398 MDAAVKPETEYAAVSTDQPRKVSVVNGYIVYTRAKRSLDSCNGFSEHAELKDNAEVEVKTENGECEKLKNESTEVVARTRKRSRRSALEAKVECCDQMVVSETEQVVANGGSGINGALGAPRNKMELKMSKKIVVNRKPMTVKKLFDTGFLDGVSVVYMGGIKKASGLRGVIRDGGILCSCCLCNGRRVIPPSQFEIHACKQYRRAAQYICLENGKSLLDLLRACRGATLHTLEVTVQNFVCSPHEERYFTCKRCKGCFPSSFVERVGPICRSCVESRKSEESSNNVVGKRVRSPRPVVLSNPSSTSELSVSSQVKRHRKKRTKASKRIICSNTSKNASVAVLPRKKNLLKMKKKSLSVKLKSPKKTLNLKSNKSQWRITKKDQRLHKLVFEENGLPDGTEVAYYARGQKLLEGFKMGSGIVCRCCNTEISPSQFEVHAGWASRKKPYAYIYTSNGVSLHELAISLSKDRKYSAKDNDDLCIVCWDGGNLLLCDGCPRAFHKECAALSSIPRGDWYCQFCQNMFQREKFVAHNANAVAAGRVEGVDPIEQIANRCIRIVKDIEADLSSCALCRGVDFSRSGFGPRTIILCDQCEKEYHVGCLRDHKMAYLKELPEGNWLCCNDCTRIHSTLENLLVKGAERLPESLLGVIKKKQEEKGLEPIIDVRWRLLNGKIASPETRPLLLEAVSIFHECFNPIVDAASGRDLIPAMVYGRNVRGQEFGGMYCALLIVNSSVVSAGMLRIFGSDVAELPLVATSNGNHGKGYFQTLFSCIERLLAFLNVKNLVLPAAEEAESIWTDKFGFSKMNPDELTNYRKNCHQMVSFKGTNMLHKMVPSCRVINNQS 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01776 844 MobiDBLite consensus disorder prediction 298 312 - -
Gma19g01776 844 MobiDBLite consensus disorder prediction 296 326 - -
Gma19g01776 844 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 44 840 - -
Gma19g01776 844 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 564 627 IPR013083 -
Gma19g01776 844 SUPERFAMILY FYVE/PHD zinc finger 559 622 IPR011011 -
Gma19g01776 844 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 466 551 IPR013083 -
Gma19g01776 844 ProSiteProfiles Zinc finger PHD-type profile. 478 523 IPR019787 -
Gma19g01776 844 SMART PHD_3 568 625 IPR001965 -
Gma19g01776 844 SMART PHD_3 480 521 IPR001965 -
Gma19g01776 844 Coils Coil 51 71 - -
Gma19g01776 844 Pfam Tify domain binding domain 170 225 IPR032308 -
Gma19g01776 844 Pfam Tify domain binding domain 418 464 IPR032308 -
Gma19g01776 844 ProSitePatterns Zinc finger PHD-type signature. 481 520 IPR019786 -
Gma19g01776 844 PANTHER AUTOIMMUNE REGULATOR 44 840 - -
Gma19g01776 844 SUPERFAMILY FYVE/PHD zinc finger 467 525 IPR011011 -
Gma19g01776 844 Pfam PHD-finger 481 522 IPR019787 -
Gma19g01776 844 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 722 808 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01776 Gma-Chr19 47013141 47021938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01776 131 841 PHD Transcription Factor Family AT2G36720 54.508 0.0 817
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma19g01776 TDBD 1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01776 - - gmx:100802562 1669.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01776 19 47013141 47021938 Gma19g01776 19 47013141 47021938 ECH
Gma19g01776 19 47013141 47021938 Gma10g00573 10 5986187 5997535 PCT
Gma19g01776 19 47013141 47021938 Gma13g01264 13 26966529 26978174 PCT
Gma10g01397 10 40821630 40825638 Gma19g01776 19 47013141 47021938 PCT
Gma20g00888 20 35223342 35227286 Gma19g01776 19 47013141 47021938 PCT
Gma10g00573 10 5986187 5997535 Gma19g01776 19 47013141 47021938 PCT
Gma13g01264 13 26966529 26978174 Gma19g01776 19 47013141 47021938 PCT