Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01764 ATGGCGTTCCCTTTGGGAGCCCTCATGACCACCACACTATTGCTCTTTCTTGTTGCATTTTCACTAATTCCTAATGTCCATGCAACGATTAGGTCCTCATGGGGACATGCTGCTCATAACATGGTTGGAAGAGATAACAAGATAGTTGACCTCCACAAGCATCACCCCGTTTTTGGGCCTGGCCCTTGGAGGCAAGCTTATGCTACTTTCTATGAGGGAGGCTCTGGAACATTTGGAGGAGCTTGTGGGTATGATGATGTGGTTAAAGATGGTTATGGGCTTGACACGGCAGCATTGAGCTCAGTTTTGTTCAAGCACGGTGAGGCATGTGGGGCATGTTACGAGATCAAATGTGTAAACTCTACTCAATGGTGTAAGCCAAAACCCTCTGTTTTTGTGACAGCAACCAACCTTTGCCCCCCCAATTATTCTCAACCAGGTGACAATGGAGGATGGTGCAACCCTCCACGCCAGCACTTTGATTTAGCCAAACCTGCTTATCTCAAAATTGCACAGTACAAGGCTGGCATCGTCCCAGTCCAATATCGCAGGGTACCATGCAAGAAGCAAGGGGGTATTCGGTTCACAATCACTGGGAATCCTTACTTCAACCTAGTAAAAGTGTGGAATGTGGGAGGAGCTGGGGACATCACAGAAGTACAGGTGAAGGGTGACAAGAAGCTGATCAATTGGACAAATTTGAAGCGAAATTGGGGTGAGAAATGGGAGACTAATGCCATGTTAGTGGGAGAGACATTGACTTTTAGGGTTAAAGCCAGTGATGGCAGGTACTCTACCTCTTCCAGTGTTGCCCCCAAGAATTGGCAGTTTGGTCAAACCTTTGAAGGCAAAAACTTCCCATAA 864 0.4699 MAFPLGALMTTTLLLFLVAFSLIPNVHATIRSSWGHAAHNMVGRDNKIVDLHKHHPVFGPGPWRQAYATFYEGGSGTFGGACGYDDVVKDGYGLDTAALSSVLFKHGEACGACYEIKCVNSTQWCKPKPSVFVTATNLCPPNYSQPGDNGGWCNPPRQHFDLAKPAYLKIAQYKAGIVPVQYRRVPCKKQGGIRFTITGNPYFNLVKVWNVGGAGDITEVQVKGDKKLINWTNLKRNWGEKWETNAMLVGETLTFRVKASDGRYSTSSSVAPKNWQFGQTFEGKNFP 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01764 287 PRINTS Expansin/Lol pI family signature 62 77 IPR007118 GO:0005576
Gma19g01764 287 PRINTS Expansin/Lol pI family signature 100 118 IPR007118 GO:0005576
Gma19g01764 287 PRINTS Expansin/Lol pI family signature 175 191 IPR007118 GO:0005576
Gma19g01764 287 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Gma19g01764 287 PRINTS Expansin/Lol pI family signature 269 283 IPR007118 GO:0005576
Gma19g01764 287 Gene3D - 191 286 IPR036749 -
Gma19g01764 287 SUPERFAMILY Barwin-like endoglucanases 62 210 IPR036908 -
Gma19g01764 287 PRINTS Expansin signature 91 105 IPR002963 GO:0009664
Gma19g01764 287 PRINTS Expansin signature 118 129 IPR002963 GO:0009664
Gma19g01764 287 PRINTS Expansin signature 131 141 IPR002963 GO:0009664
Gma19g01764 287 PRINTS Expansin signature 150 167 IPR002963 GO:0009664
Gma19g01764 287 PRINTS Expansin signature 167 180 IPR002963 GO:0009664
Gma19g01764 287 PRINTS Expansin signature 191 203 IPR002963 GO:0009664
Gma19g01764 287 PRINTS Expansin signature 203 224 IPR002963 GO:0009664
Gma19g01764 287 PRINTS Expansin signature 240 261 IPR002963 GO:0009664
Gma19g01764 287 PRINTS Expansin signature 269 285 IPR002963 GO:0009664
Gma19g01764 287 PANTHER EXPANSIN-A15 17 286 IPR002963 GO:0009664
Gma19g01764 287 SMART dpbb_1 96 182 IPR007112 -
Gma19g01764 287 Pfam Expansin C-terminal domain 193 272 IPR007117 -
Gma19g01764 287 PANTHER EXPANSIN-A32 17 286 - -
Gma19g01764 287 Pfam Lytic transglycolase 96 182 IPR009009 -
Gma19g01764 287 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 202 283 IPR007117 -
Gma19g01764 287 Gene3D - 47 188 IPR036908 -
Gma19g01764 287 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 79 192 IPR007112 -
Gma19g01764 287 SUPERFAMILY PHL pollen allergen 189 283 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01764 Gma-Chr19 46925096 46926977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01764 57 286 Expansin Gene Family AT3G55500 64.378 3.67e-110 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01764 - - gmx:100800424 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01764 19 46925096 46926977 Gma19g01764 19 46925096 46926977 ECH