Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01758 ATGCAAAAGCAAGAGGAATTACATGCGGTGTGCAAGGATTACATGCAAATCATCAAGGGCAAGCGCACCAAGCGACAAAGGCTTCCATCCCCACTTAGGTTAACCATGTCAACAACATGTTCCAGTTTAGGAAGAAGCAGCACCGACAACTCCGTAGGTTTTGATATTCCAACAACCTCAAATGAATCAAGGAACGAAGAGGAGGACATGGCAAATTGTTTGATTCTCTTAGCTCAAGGTCACAACAATACTCCAAAACCCTCACGCACCAACAAGGGAGGGTTATACCTTTACGAGTGCAAGACTTGTAACCGATGCTTCCCTTCATTTCAAGCCCTTGGTGGCCACAGAGCCAGCCACAAGAAATATTCCAAGGCAAGTGCAGAAGAAAAGCAAGGAGTTGCAACTACTTTTGTGAATTATGAAGTCGATAATAATAATAATAATCATAATCATGATGATTATTGTGACCCCACAAGCACCCCCCTCACCTTACAATTATCAACGGCTTTGTATAATAATAGCAGCAGCATTAGGAGTACTATTAATGCTAAAGCTAAAGTTCATGAGTGTTCCATATGTGGGGCAGAATTTTCATCTGGGCAAGCGTTGGGGGGACACATGAGAAAGCATAGAAATTTTCTGAGTGCACCTATTATTGGGGCAATTAATATTGCAAATGGTGGTGATGGAAGCCCTAAAGTTCCGGAAGCCAAGAAACACAAAGATGTTTTGAACTTGGACTTGAATCTTCCGGCACCTGAGGATGATCATCTCAGAGAATCCAACTTGTTTCCTTTTCAGGCCAAAGAAAAAGTTATTGTCTTCTCAGCAACTTCTTTGGTGGATTGCCATTACTAA 861 0.4204 MQKQEELHAVCKDYMQIIKGKRTKRQRLPSPLRLTMSTTCSSLGRSSTDNSVGFDIPTTSNESRNEEEDMANCLILLAQGHNNTPKPSRTNKGGLYLYECKTCNRCFPSFQALGGHRASHKKYSKASAEEKQGVATTFVNYEVDNNNNNHNHDDYCDPTSTPLTLQLSTALYNNSSSIRSTINAKAKVHECSICGAEFSSGQALGGHMRKHRNFLSAPIIGAINIANGGDGSPKVPEAKKHKDVLNLDLNLPAPEDDHLRESNLFPFQAKEKVIVFSATSLVDCHY 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01758 286 PANTHER GATA ZINC FINGER DOMAIN-CONTAINING PROTEIN 15-LIKE 5 89 - -
Gma19g01758 286 PANTHER GATA ZINC FINGER DOMAIN-CONTAINING PROTEIN 15-LIKE 89 286 - -
Gma19g01758 286 PANTHER ZINC FINGER PROTEIN ZAT5 89 286 - -
Gma19g01758 286 PANTHER ZINC FINGER PROTEIN ZAT5 5 89 - -
Gma19g01758 286 SUPERFAMILY beta-beta-alpha zinc fingers 97 211 IPR036236 -
Gma19g01758 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Gma19g01758 286 Pfam C2H2-type zinc finger 98 122 - -
Gma19g01758 286 Pfam C2H2-type zinc finger 188 212 - -
Gma19g01758 286 Gene3D Classic Zinc Finger 95 211 - -
Gma19g01758 286 SMART c2h2final6 189 211 IPR013087 -
Gma19g01758 286 SMART c2h2final6 98 120 IPR013087 -
Gma19g01758 286 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Gma19g01758 286 ProSitePatterns Zinc finger C2H2 type domain signature. 191 211 IPR013087 -
Gma19g01758 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 189 211 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01758 Gma-Chr19 46895445 46896305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01758 1 286 C2H2 Transcription Factor Family AT2G28200 41.905 4.23e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma19g01758 zf-C2H2_6 2.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01758 - - gmx:100775268 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01758 19 46895445 46896305 Gma03g01708 03 43256452 43257512 ECH
Gma19g01758 19 46895445 46896305 Gma19g01758 19 46895445 46896305 ECH
Gma19g01758 19 46895445 46896305 Gma11g01579 11 16967680 16969026 ECH
Gma19g01758 19 46895445 46896305 Gma12g00726 12 6532347 6533294 ECH
Gma19g01758 19 46895445 46896305 Gma13g02863 13 43134543 43135859 ECH
Gma19g01758 19 46895445 46896305 Gma12g01686 12 37304460 37305861 ECH
Gma19g01758 19 46895445 46896305 Gma03g01708 03 43256452 43257512 GST
Gma19g01758 19 46895445 46896305 Gma10g00543 10 5590845 5592009 PCT
Gma19g01758 19 46895445 46896305 Gma13g01255 13 26863900 26864766 PCT
Gma10g00543 10 5590845 5592009 Gma19g01758 19 46895445 46896305 PCT
Gma13g01255 13 26863900 26864766 Gma19g01758 19 46895445 46896305 PCT