Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01716 ATGCTATTTCAGGAATTTGCAGTGAGAACAGGTTACTGTATGATGGAGTCAAAGGAGAAATTGAAAGAGGTGGAGAAGTGTTTGGATTCTCGGCTATGGCATGCGTGTGCGGGAGGGATGGTTCAAATGCCAGTGGTGAATGCTAAGGTGTTCTACTTTCCTCAGGGTCATGCTGAACATGCATGTGGACCCGTGGACTTCAGGGTTTATCCCAAAATTCCACCTTTCATTCAATGCAAAGTTGGAGCTATCAAATACATGGCTGATCCTGAAACTGATGAGGTTTATGTAAAGCTTAGGCTTGTTCCTTTGACCAGAAACGAGGGTGATTTTGAGGATGATGCTGTTGGAGGCATCAATGGATCTGAAAATAAAGATAAATCCCCTTCTTTTGCCAAAACCTTGACACAGTCTGATGCCAACAATGGTGGGGGCTTTTCTGTTCCCAGATATTGTGCTGAGACAATTTTTCCTCGGTTGGACTATTCCGCGGACCCTCCCGTTCAGAACATCCTTGCCAAGGATGTTCATGGTGAGACATGGAAATTTAGGCACATTTATAGGGGCACGCCGCGCCGGCACTTGTTAACTACCGGGTGGAGTAGCTTTGTGAATCACAAGAAGCTTGTGGCGGGGGATTCAATTGTGTTTTTGAGGGCAGAAAAGGATGATCTGCGTGTTGGAATTCGGCGGGCTAAGAGGGGGATTGGAATTGGTGGAGGACCTGAGGCTCCTGCAGGGTGGAATTCAGGTGGGGGGATTCGTCCTATGCCTTATGGAGGGTTTTCAGCTTTTTTGAGAGAGGAAGATAGCCAGCTCTTGAGAAATGGGTTGAGTCCAAATGCAAAGGGGAAAGTGAGGCCTGAAGCAGTTATTGAGGCTGCAACTCTTGCTGCCAATATGCAGCCATTTGAGGTTGTTTACTATCCCCGGGCAAGTGCCCCAGAGTTTTGTGTGAAGGCCAATTTAGTTAGAGCCGCATTGCAGGTTAGGTGGTGTCCTGGAATGAGGTTCAAGATGCCCTTTGAAACAGAGGACTCCTCGCGGATAAGCTGGTTTATGGGAACCATCTCTTCTGTTAACTTTGCTGATCCAAGATGGCCCAACTCTCCTTGGAGACTTCTCCAGGTTACATGGGATGAACCAGAGTTACTTCAAAATGTAAAAAGGGTGAGCCCGTGGCTGGTTGAAATTGTATCAAACATGCCTACCATTCATCTTTCCCATTACTCAACACAACAAAAGAAGCCAAGATTCCCTCAACACCCGGATTTTTCTTTTGATGGTCAGATTTCATTGCCAGCATTTCCCAGCAACTTTCTAGGTCCAAGCAATCCGTTTGGTTGTCTAGCTGAAAGTACTCCTGCTGGCATACAGGGAGCCAGGCATGCTAATTATGGTATATCCCTATCAAATCTCCACTTCAATAAACTGCAGTCAGGCCTATTTCAAGCTGGTTTCCCTCCACTTGATCACACTGCTTCCCCAGTATTGAGAGTCTCCTCCAACAATGCAGCAACAATGCAAAAGGTCGGCACGGGTGACAACGTCTCTTGCTTACTGTCCATGTCAACTGCTACTCAACCTTCAAAGAAAGTGGATGATGTGAAGGCACCCCAATTGGTGCTTTTTGGCCAAACAATTCTCACCGAACAGCAAATTTCTTTGAACACCTCTGCTAAGACAGATCCTACTCGAAATAATTCATTTGATGGAAATGCTGATAAAATGTGCAAGTTTTCAGATGGTTTTGGTTATGCTCTTCACCCACAAGGCTCTTCTCTTGAGAGGTTACAGTGGTACAAGGATCAACAAAAAGAAACCATGGCTAGTTTGGAGACAGGTCACTGTAAAGTTTTTATGGAATCTGAAGACATTGGTCGGACTATGGATCTCACAATGCTTGGATCTTATGATGAATTGTATAGAAAGCTGGCAGACATGTTTGGCATAGAAAAATCTGTGGTGCTAAGTCACATGCTTTACCGTGATACAACTGGGGCAGTCAAGCACATTGGAGATGAAGCATTCAGCGAATTTACCAAAACTGCAAGGAGGTTGACCATTCTAATGGATTCCAACAGCGATGGTAGAGGAATCTAG 2103 0.4541 MLFQEFAVRTGYCMMESKEKLKEVEKCLDSRLWHACAGGMVQMPVVNAKVFYFPQGHAEHACGPVDFRVYPKIPPFIQCKVGAIKYMADPETDEVYVKLRLVPLTRNEGDFEDDAVGGINGSENKDKSPSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSSFVNHKKLVAGDSIVFLRAEKDDLRVGIRRAKRGIGIGGGPEAPAGWNSGGGIRPMPYGGFSAFLREEDSQLLRNGLSPNAKGKVRPEAVIEAATLAANMQPFEVVYYPRASAPEFCVKANLVRAALQVRWCPGMRFKMPFETEDSSRISWFMGTISSVNFADPRWPNSPWRLLQVTWDEPELLQNVKRVSPWLVEIVSNMPTIHLSHYSTQQKKPRFPQHPDFSFDGQISLPAFPSNFLGPSNPFGCLAESTPAGIQGARHANYGISLSNLHFNKLQSGLFQAGFPPLDHTASPVLRVSSNNAATMQKVGTGDNVSCLLSMSTATQPSKKVDDVKAPQLVLFGQTILTEQQISLNTSAKTDPTRNNSFDGNADKMCKFSDGFGYALHPQGSSLERLQWYKDQQKETMASLETGHCKVFMESEDIGRTMDLTMLGSYDELYRKLADMFGIEKSVVLSHMLYRDTTGAVKHIGDEAFSEFTKTARRLTILMDSNSDGRGI 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01716 700 ProSiteProfiles PB1 domain profile. 614 694 IPR000270 GO:0005515
Gma19g01716 700 Gene3D - 331 404 - -
Gma19g01716 700 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 691 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma19g01716 700 Pfam Auxin response factor 294 376 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma19g01716 700 Pfam B3 DNA binding domain 131 232 IPR003340 GO:0003677
Gma19g01716 700 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Gma19g01716 700 MobiDBLite consensus disorder prediction 113 138 - -
Gma19g01716 700 SMART B3_2 131 233 IPR003340 GO:0003677
Gma19g01716 700 CDD B3_DNA 129 231 IPR003340 GO:0003677
Gma19g01716 700 Gene3D - 129 233 IPR015300 -
Gma19g01716 700 Gene3D - 611 696 - -
Gma19g01716 700 PANTHER AUXIN RESPONSE FACTOR 16 691 - -
Gma19g01716 700 SUPERFAMILY DNA-binding pseudobarrel domain 124 233 IPR015300 -
Gma19g01716 700 MobiDBLite consensus disorder prediction 123 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01716 Gma-Chr19 46454120 46457693 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01716 24 696 B3 DNA Binding Superfamily AT4G30080 57.681 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma19g01716 B3 4e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01716 - - gmx:100791442 1411.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01716 19 46454120 46457693 Gma20g01687 20 44044635 44047193 ECH
Gma19g01716 19 46454120 46457693 Gma19g01716 19 46454120 46457693 ECH
Gma19g01716 19 46454120 46457693 Gma11g01633 11 17685358 17688537 ECH
Gma19g01716 19 46454120 46457693 Gma12g00677 12 5940115 5943771 ECH
Gma19g01716 19 46454120 46457693 Gma13g02897 13 43555246 43558047 ECH
Gma19g01716 19 46454120 46457693 Gma12g01641 12 36558721 36561798 ECH