Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01712 ATGAAGAATCCTTTTTCTTTTTGCACTTGTTTCTCAGCATCGATCAAAGAACAAACCAAGCACGAGGAGCCAGATGAAGATAATAATGATGGCAACTTTCGCTTATTCACGTATAGAGAATTGAATTCTGCCACACGTGGTTTTCACCCATCGGAAAAGATTGGAGAAGGAGGCTTTGGCACTGTCTACAAGGGGCAGCTTCGGGATGGAACTTTGGTGGCAGTGAAAGTGCTTTCAATTGAGCTAGATTCCTTGAGAGGAGAGAGGGAGTTTGTGGCAGAATTGAATACACTAACAAATATCAAACACCACAATCTTGTCAATCTCCGAGGGTGTTGTGTAGAAGGAGCCCACAGATACATAGTCTACGACTACATGGAAAACAATAGCCTTCGTTACACTTTCTTAGGTTCAGAGCAAAAAAGGATGGAATTCAGCTGGGAAACTCGGAGGGATGTATCCATAGGTGTGGCCAGAGGGCTTGCCTTTCTCcatgaggaacatcaaccccatattgtgcatagagatatcaaatccagcaatgttcttcttgatccaaattttacaccaaaagtctcggattttggcttggccaaGCTACTAAGAGATGAAAAGTCCCATGTCACTACCCATGTTGCAGGCACATTgggttatcttgcaccagactatgctagttctggacacttgacacgaaaatcagatgtttatagctttggagtactacttttggaaattgtcagtggccaaagagtggtagatgcttatcaaAACGGGGAACGTTTCATAGTTGAGAAGGCTTGGGCAGCATATGAGGCTAATGATCTTCTGAGAATGGTGGATCCAGTGCTGAATAACAACTATCCCGCGGAAGAAGTGAAACGGTTCCTAATGGTGGGGCTGCGTTGCGTGCAAGAAATGGCGAGGCTTAGGCCACGAATGTCAGAGGTTTTGGACATGTTGACCAACAATGTTGACATGGGAGAGTTTAGTGTTTCAAAACCAGGATTAGTCACTGATCTCAGGAGCGCCAGAATAAGGAGCCAAATGAATCCATCAGAAGAATCAAGTGTTACTGCAGCAACCTTTGCAGACTCCTCTGGATGGAGTACCGCCAATCTTGCCCGTTAG 1128 0.3644 MKNPFSFCTCFSASIKEQTKHEEPDEDNNDGNFRLFTYRELNSATRGFHPSEKIGEGGFGTVYKGQLRDGTLVAVKVLSIELDSLRGEREFVAELNTLTNIKHHNLVNLRGCCVEGAHRYIVYDYMENNSLRYTFLGSEQKRMEFSWETRRDVSIGVARGLAFLHEEHQPHIVHRDIKSSNVLLDPNFTPKVSDFGLAKLLRDEKSHVTTHVAGTLGYLAPDYASSGHLTRKSDVYSFGVLLLEIVSGQRVVDAYQNGERFIVEKAWAAYEANDLLRMVDPVLNNNYPAEEVKRFLMVGLRCVQEMARLRPRMSEVLDMLTNNVDMGEFSVSKPGLVTDLRSARIRSQMNPSEESSVTAATFADSSGWSTANLAR 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01712 375 Pfam Protein kinase domain 49 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma19g01712 375 ProSitePatterns Protein kinases ATP-binding region signature. 54 76 IPR017441 GO:0005524
Gma19g01712 375 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 9 348 - -
Gma19g01712 375 SMART serkin_6 48 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma19g01712 375 Gene3D Transferase(Phosphotransferase) domain 1 126 331 - -
Gma19g01712 375 PANTHER RECEPTOR-LIKE KINASE 9 348 - -
Gma19g01712 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Gma19g01712 375 ProSiteProfiles Protein kinase domain profile. 48 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma19g01712 375 Gene3D Phosphorylase Kinase; domain 1 9 125 - -
Gma19g01712 375 SUPERFAMILY Protein kinase-like (PK-like) 29 337 IPR011009 -
Gma19g01712 375 CDD STKc_IRAK 54 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01712 Gma-Chr19 46399384 46401492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01712 36 339 Receptor kinase-like Gene Family AT1G56120 50.164 9.14e-96 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma19g01712 Pkinase 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01712 - - gmx:100790388 709.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01712 19 46399384 46401492 Gma19g01712 19 46399384 46401492 ECH
Gma19g01712 19 46399384 46401492 Gma03g01666 03 42730588 42732718 GST