Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01709 ATGGCCACTGAAGCACATCACTTTCCCAAGATTAATGACCAAGGCACTTCTAGTTCTAGTAGAGCTTATAACCCAATTCAAAAGGATGTAGAGCCATCCGAAATAACTGAGGAACTCCCTAGTAGACATACACATGGGAGAAGTAAAAGCCTTACCGAGATACCCACAAGAACGCTAGATGAAACAAGAGAGGAATTTTTTAGAACAAGCAAACCTCCAACTCCATCTCTTAGAAGCCAAATAAATGAGTTCCAAGTTCCTTCTTCAACCAAAAATGAATCAACTACTAAAACTCTTATTCCCAAGCTCAGTTTTAAATTTCACAACACTTGTTCAGATGTTGAAGAGGCATCCATCCCAGCACTTGAAGGTTCACCCCCAGAACGACTGCAAGATCCTATTATTTCAAGAACATCATCACCTAATGGGAAGAAAATATCATCCCTACCTGTCACTCCAATTGCTCAGTCAAATCAGGAGTCTGAGCATGGAGGGAACATTTCCTACCCAGCAACACATGTTAAAAAAGGACAGCAGTTACCGATGCATCGTTCCCGTTCAGTTCCTGTGCTTACCGAAGATGGCAACACATACGTAGGTGCCATGTTTCGTATTGTTCCTACCACACCACGGTTGGCAAGGAGTATTGCCACAACATCTACGAAATCTCCACCTGACGACACCATCGAAAACGAGGATGGGGAAGATATTCCTGAAGAAGAAGCCGTCTGCAGAATTTGTTTGATAGAATTGGGAGAAGGTTCTGATACCCTTAAAATGGAGTGCAGCTGCAAAGGTGAACTTGCACTGGCACACCAAGAATGTGCAGTTAAATGGTTTAGCATTAAAGGCAACAGAACATGCGATGTGTGCAAGCAGGAAGTTCAGAACCTACCCGTCACTCTTCTACGAGTTCTAAATGGCCAGACACTTTACTTGACAAGGAGTAGAAGCCAACAATACAGGCAAGGAGAAACCAATAACTTTCACAGGGTTTGGCAAAATGTCCCCATTCTTGTGATCATCAACATGCTGGCATACTTTTGTTTTCTTGAGCAGCTACTTGTTTCAAGTATGGGATCTGGTGCCGTTGCCATTTCTCTCCCTTTTTCATGTATACTAGGTCTACTTGCAAGCATGACATCCACAATTATGGTGACGTGTGAACATGTTTGGGTTTATGCAATTGCCCAGTTTGTTATGGTGGTTCTGGCTGGACGTCTTTTCTATTCACTGCTTAATAAGGAAGCCGTTCTATCCATCCTACTTGCTACATTTACTGGGTTTGGAGCTGTGATGTGTGGAGCTTATATTCTTATTGAGTTTTTGAAGTGGAGAAGACGATGGCTTGGTTCCCAAGAGGTGGTGCTGCCTCATTAA 1380 0.4297 MATEAHHFPKINDQGTSSSSRAYNPIQKDVEPSEITEELPSRHTHGRSKSLTEIPTRTLDETREEFFRTSKPPTPSLRSQINEFQVPSSTKNESTTKTLIPKLSFKFHNTCSDVEEASIPALEGSPPERLQDPIISRTSSPNGKKISSLPVTPIAQSNQESEHGGNISYPATHVKKGQQLPMHRSRSVPVLTEDGNTYVGAMFRIVPTTPRLARSIATTSTKSPPDDTIENEDGEDIPEEEAVCRICLIELGEGSDTLKMECSCKGELALAHQECAVKWFSIKGNRTCDVCKQEVQNLPVTLLRVLNGQTLYLTRSRSQQYRQGETNNFHRVWQNVPILVIINMLAYFCFLEQLLVSSMGSGAVAISLPFSCILGLLASMTSTIMVTCEHVWVYAIAQFVMVVLAGRLFYSLLNKEAVLSILLATFTGFGAVMCGAYILIEFLKWRRRWLGSQEVVLPH 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01709 459 MobiDBLite consensus disorder prediction 10 26 - -
Gma19g01709 459 CDD RING_CH-C4HC3_MARCH 244 292 - -
Gma19g01709 459 Pfam RING-variant domain 244 291 IPR011016 GO:0008270
Gma19g01709 459 SUPERFAMILY RING/U-box 240 295 - -
Gma19g01709 459 ProSiteProfiles Zinc finger RING-CH-type profile. 236 298 IPR011016 GO:0008270
Gma19g01709 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 229 299 IPR013083 -
Gma19g01709 459 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 15 452 - -
Gma19g01709 459 MobiDBLite consensus disorder prediction 31 68 - -
Gma19g01709 459 PANTHER OS02G0165000 PROTEIN 15 452 - -
Gma19g01709 459 MobiDBLite consensus disorder prediction 1 77 - -
Gma19g01709 459 SMART ringv_2 243 292 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01709 Gma-Chr19 46370018 46374836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01709 229 298 C3H Transcription Factor Family AT2G37950 39.437 1.54e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01709 - - gmx:100789854 887.486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01709 19 46370018 46374836 Gma19g01709 19 46370018 46374836 ECH