Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01706 ATGAAGATGGTAACTGCTTTCAACGGCAACATGAAGAAAGCTGCTGCTGGACTTAGACGCATTAATCTTGATGGTCTTCGATGGAGGGTTTTTGACGCAAAGGGCCAGGTTCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTCAAGGAAAGGATAAACCAACTTACACACCTAATCGTGATGATGGGGATATGTGCATTGTTCTTAATGCAAAAGATATTTGTGTGACTGGGAGAAAACTTACAGACAAGGTCTACTACTGGCATACAGGGCAAGTGCTTTGCATTTTCATGGTATGTAGGTATATTGGCCACCTCAAGCAAAGGACTCTAAAGGATCAAATGGCCAAAGACCCTACTGAAGTCATTCGCAAAGCTGTTCTGCGTATGCTGCCTAGAAACAAACTACGTGATGACAGGGATCGAAAATTAAGGATCTTTCCTGGCAGTGAGCACCCTTTTGTTGATCGCCCACTTGAACCGTATGTGATGCCTCCTAGAAGCGTACGGGAAATGAGGCCGCGAGCAAGGCGTGCCATGATTCGAGCACAGAAGAAGGCAGAGCAGCAACAACAGAAGGCTGATGGAATGAAGGGCAAAAATGGACACAGCGTTGTGGTAAAATCCACGTGTAGACCGGTGATTGGACAAACTACGTGGGATGAGATGGTGCCGTGTAGGCAAAAGCAGCTACTACTATTAGTGCCCTCTACTTGTTCCTCTGCGAATGTGAAAAACACCAACCAACGAGGATTCGAAATCACAGAGGAAAAGGAAGATCTCACAATGTTCAATGTTATCGGTTTCTCGTTGTTGACGATGGATTCGGTGGCGTACAGGGGATTGCTCTACACATTCTTCATACTCAATTTTGTTTTGGTCTGCCAACTCATTCTCCTTCAACCTCTCGTCTCTGCTTCTGATGGAAAACCTGAAAATGCTGCTGAGTTGTTTGAGCGTGCATCACAGAGCATAAAAGTGAAAGATTATACTGAGGCACTTGATGATCTAAATGCTGCGATAGAAGCAGACCCAACCCTTTCAAAAGCATACCTTTTCAGAGCCTCAGTTCTTCGTCAGTTATGCAGATATGAGCAATCTGAGAGGAGCTACAAAAAGTTTCTGGAGTTAAAACCTGGAGATTCAGCTGCAGAAAAGGAGCTCTCTCAACTATTGCAGGCTCAAAGTGCTCTGGAAACAGCTCAGTCCCTCTATGATTCGGGCAACTTCTCAAAATCTTTGGAATACATTGATAAAGTTGTTCTTGTTTTTTCTTCAGCTTGCAATAAGGCTAAGCTTCTTAAAGTGAAAGTGTTAATTGCTGATAAAGAGTATGAGAGTGCTATTGCTGAGTCTGGTTTTCTTCTTAAGGAAGATGAAAATAATTTAGAGGCATTGTTGTTACGTGGTCGTGCATATTACTATTTAGCTGATCATGATGTTGCCACGAGGCATTTTCAGAAAGGTCTCCGCCTAGATCCAGAGCATAGTGAACTGAAAAAGGCATATTTTGGATTGAAAAATCTACTAAAAAAGAGTAAAAGTGCTGAAGATAATGCTAGTAAGGGTAAACTACGTGTGGCAGTGGAGGAATTCAAAGCTGCACTTGCTGTTGACCCTATACATCTTGCACACAATGTACATCTTCATCTTGGCTTATGTAAAGTGCTAGTCAAGCTTGGCAGAGGAAAAGATGCCTTGGACAGTTGTAGTGAAGTTCTTAAGATTGATGAGGAGCTTGTGGAAGCTCTTGTTCAGagaggagaagctaaactcttaacagaagattgggagggagctgtggaggatctgagatcagctgctcaaaaattgcctcagGATATGAATATCCGTGAAGCAGTAATGAGGGCCGAGAAAGCTTTAAAGATAAGCAAACGCAAGGACTACTACAAAATTTTGGGAATTTCAAAAACAGCTTCGGCTGCTGATATAAAACGTGCCTACAAGAAACTCGCCTTACAATGGCATCCAGATAAGAACGTCGACAAGAGGGAAGAAGCAGAGGCTAAATTCCGAGAAATTGCTGCTGCTTATGAGGTTCTCAGCGATGAAGACAAGCGTGTAAGATATGACAGAGGGGAGGACCTTGAAGAGATGGGAACGGGCGGTGGCGGCGGCGGCGGTGGTTTCAACCCTTTTGGTGGTGGGGGGTATACATATACTtttgagggtggcttccctggtggtggctttggaggaggctttcccggtggtggatttggagggggctttcccggcggtggcGGTGGCGGTGGATTTGAGTTCCATTTTTGA 2298 0.4056 MKMVTAFNGNMKKAAAGLRRINLDGLRWRVFDAKGQVLGRLASQIATVVQGKDKPTYTPNRDDGDMCIVLNAKDICVTGRKLTDKVYYWHTGQVLCIFMVCRYIGHLKQRTLKDQMAKDPTEVIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFVDRPLEPYVMPPRSVREMRPRARRAMIRAQKKAEQQQQKADGMKGKNGHSVVVKSTCRPVIGQTTWDEMVPCRQKQLLLLVPSTCSSANVKNTNQRGFEITEEKEDLTMFNVIGFSLLTMDSVAYRGLLYTFFILNFVLVCQLILLQPLVSASDGKPENAAELFERASQSIKVKDYTEALDDLNAAIEADPTLSKAYLFRASVLRQLCRYEQSERSYKKFLELKPGDSAAEKELSQLLQAQSALETAQSLYDSGNFSKSLEYIDKVVLVFSSACNKAKLLKVKVLIADKEYESAIAESGFLLKEDENNLEALLLRGRAYYYLADHDVATRHFQKGLRLDPEHSELKKAYFGLKNLLKKSKSAEDNASKGKLRVAVEEFKAALAVDPIHLAHNVHLHLGLCKVLVKLGRGKDALDSCSEVLKIDEELVEALVQRGEAKLLTEDWEGAVEDLRSAAQKLPQDMNIREAVMRAEKALKISKRKDYYKILGISKTASAADIKRAYKKLALQWHPDKNVDKREEAEAKFREIAAAYEVLSDEDKRVRYDRGEDLEEMGTGGGGGGGGFNPFGGGGYTYTFEGGFPGGGFGGGFPGGGFGGGFPGGGGGGGFEFHF 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01706 765 ProSiteProfiles TPR repeat profile. 464 497 IPR019734 GO:0005515
Gma19g01706 765 Gene3D DnaJ domain 634 743 IPR036869 -
Gma19g01706 765 Gene3D Tetratricopeptide repeat domain 304 633 IPR011990 GO:0005515
Gma19g01706 765 SMART tpr_5 582 615 IPR019734 GO:0005515
Gma19g01706 765 SMART tpr_5 395 428 IPR019734 GO:0005515
Gma19g01706 765 SMART tpr_5 464 497 IPR019734 GO:0005515
Gma19g01706 765 SMART tpr_5 349 382 IPR019734 GO:0005515
Gma19g01706 765 SMART tpr_5 315 348 IPR019734 GO:0005515
Gma19g01706 765 SMART tpr_5 548 581 IPR019734 GO:0005515
Gma19g01706 765 Gene3D Ribosomal protein L13 25 173 IPR036899 GO:0003735|GO:0005840|GO:0006412
Gma19g01706 765 CDD DnaJ 636 691 IPR001623 -
Gma19g01706 765 Pfam Tetratricopeptide repeat 328 383 - -
Gma19g01706 765 Hamap 50S ribosomal protein L13 [rplM]. 28 161 IPR005822 GO:0003735|GO:0005840|GO:0006412
Gma19g01706 765 TIGRFAM rplM_bact: ribosomal protein uL13 27 155 IPR005823 GO:0003735|GO:0005840|GO:0006412
Gma19g01706 765 CDD Ribosomal_L13 28 151 IPR005822 GO:0003735|GO:0005840|GO:0006412
Gma19g01706 765 SUPERFAMILY TPR-like 311 631 IPR011990 GO:0005515
Gma19g01706 765 ProSitePatterns Nt-dnaJ domain signature. 679 698 IPR018253 -
Gma19g01706 765 ProSiteProfiles TPR repeat profile. 349 382 IPR019734 GO:0005515
Gma19g01706 765 SUPERFAMILY Chaperone J-domain 630 739 IPR036869 -
Gma19g01706 765 Coils Coil 672 692 - -
Gma19g01706 765 SUPERFAMILY Ribosomal protein L13 27 159 IPR036899 GO:0003735|GO:0005840|GO:0006412
Gma19g01706 765 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 272 743 IPR044620 -
Gma19g01706 765 Pfam DnaJ domain 636 699 IPR001623 -
Gma19g01706 765 ProSiteProfiles dnaJ domain profile. 636 702 IPR001623 -
Gma19g01706 765 PRINTS DnaJ domain signature 674 694 IPR001623 -
Gma19g01706 765 PRINTS DnaJ domain signature 656 671 IPR001623 -
Gma19g01706 765 PRINTS DnaJ domain signature 638 656 IPR001623 -
Gma19g01706 765 PRINTS DnaJ domain signature 694 713 IPR001623 -
Gma19g01706 765 Coils Coil 181 201 - -
Gma19g01706 765 Pfam Tetratricopeptide repeat 465 497 IPR013105 -
Gma19g01706 765 SMART dnaj_3 635 694 IPR001623 -
Gma19g01706 765 Pfam Ribosomal protein L13 27 154 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01706 Gma-Chr19 46342614 46353040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01706 632 699 C2H2 Transcription Factor Family AT1G74250 45.833 2.33e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01706 K09523 - gmx:100804685 820.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01706 19 46342614 46353040 Gma19g01706 19 46342614 46353040 ECH
Gma19g01706 19 46342614 46353040 Gma03g01659 03 42680374 42685160 GST