Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01702 ATGGGTCATAGGCACTTACATAACACATCTTCATTGTTCGATGGTGAGCCTGACCAGAACTGGAATCATTTGCATACTGATCAACAATATGTGCACCTTGGTAGGACTAACACTTCAGAGAATAGTTCATTTATTTATCCTGCTGAAAATATGTCCATAGATAGCATATCTTTCCCCTCTCATTGGAATTCTTCCTCAAGGTCAAATGGATATGCATCCTCTAGTCACAACATTGTTGTACCTCCTCACCAGTCAGATGCATCAGGCACTTCTAATGATCATTTTGTGCATTCGTCTAGTGCTGGACCATTCTTTACAGTGTCGGAAAATTATTTACACCAACCTTCTTCCTCCAATTATGACAGACAAACATTTCATGTTGATGCTGGTTTTATTGATCTTACAATGGGAAGTGGACAAGGGCATCACAAGCGTAAGAGCCCTGGAATTCCTTCAGTCTACGAGGGAGGCAGTACTAGTAGATACTTTAATGCTGGGAGTTCAACTGATCTTCCTATATCTTCAGAATTGTGGCAGGAGAAGCCAAATATTGATTCTCAATATATGCCCTGGGATCATTTTACTATGACACCCACATTCAGAGGTACTGGCCTTTCAATTAAGGGTGAGGGTTCTTTGCGGAATGTGAGGAGCCGTTCTACACTTGATTTGGATTCCAATCTGTCTAGGACCCATTTATCAAGTAATCATTCACACAATTCCTACCCTACTGTCCCACCAGTTGACCATTCTAGCATGGCGGATCTTTCTGGTCAGACTTCTGGTACATTAACAAGGGATTGGAGCCAAATGAACATGTCTCCAGCTAATGGAAGGGTGTTATTATCAGATACAAGTTCTTTTGGTCTTGAAACAAGTCACTTCCTTGTTGGAAGTGGTGCTACTGCTAGCAATGCTTCTGTAGATGTTGGGGGCTTCCATCATGAATTTGGTGCAAGCAGAAATCCTACTGCTCCTCAAAGTTTTCATAATACTCATACTCAGACCGCTAGGGGAATTCGAAGCAACTATTCTCAGAGATCCACACCAACTTTTAGGGCTTCTTCAAGCTTGCGCTTGGGACATGTGACATCTGATGATGGATTGCCTATGGTAGCTGAAAGTTACTCTTCTAGACATCCAAGGCCATTGAGCACCATTGGCTGGAGGAATGGTGATAGAAATGGGAGGTCAAGAATTTCTAGTGAAAGATATCGATCATTGACTGAGGAGAGTGGTCTCCATGATCGATTTTCCTCTGAGGGTTTCATGGTTGTTGAGCGTGCATCAGTGTATGGTTCCAGGAATATGCTTGATCAGCACCGAGACATGAGGATGGATGTAGATAACATGAGTTATGAGGAACTACTTGCACTTGGTGAGAGGATTGGCTATGTGAACACAGGAGTCTCTGAGGATTTGCTTTCCAAATGTTTGACGGAAACAATATATTGTTCATCTGAGCAAAGTGAAGACGAAGGAAACTGCGTAATATGTCTGGAAGAGTACAAGAATATGGACGATGTTGGAACACTTCAAACTTGTGGACATGACTACCATGTGAGCTGCATTAAAAAGTGGCTATCTATGAAGAAATTATGTCCTATCTGCAAAGTATCTGCTTTGCCTGAGGATACGAAGGATAAATAA 1650 0.42 MGHRHLHNTSSLFDGEPDQNWNHLHTDQQYVHLGRTNTSENSSFIYPAENMSIDSISFPSHWNSSSRSNGYASSSHNIVVPPHQSDASGTSNDHFVHSSSAGPFFTVSENYLHQPSSSNYDRQTFHVDAGFIDLTMGSGQGHHKRKSPGIPSVYEGGSTSRYFNAGSSTDLPISSELWQEKPNIDSQYMPWDHFTMTPTFRGTGLSIKGEGSLRNVRSRSTLDLDSNLSRTHLSSNHSHNSYPTVPPVDHSSMADLSGQTSGTLTRDWSQMNMSPANGRVLLSDTSSFGLETSHFLVGSGATASNASVDVGGFHHEFGASRNPTAPQSFHNTHTQTARGIRSNYSQRSTPTFRASSSLRLGHVTSDDGLPMVAESYSSRHPRPLSTIGWRNGDRNGRSRISSERYRSLTEESGLHDRFSSEGFMVVERASVYGSRNMLDQHRDMRMDVDNMSYEELLALGERIGYVNTGVSEDLLSKCLTETIYCSSEQSEDEGNCVICLEEYKNMDDVGTLQTCGHDYHVSCIKKWLSMKKLCPICKVSALPEDTKDK 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01702 549 ProSiteProfiles Zinc finger RING-type profile. 496 538 IPR001841 -
Gma19g01702 549 CDD RING-H2_TTC3 495 538 - -
Gma19g01702 549 MobiDBLite consensus disorder prediction 69 94 - -
Gma19g01702 549 SMART ring_2 496 537 IPR001841 -
Gma19g01702 549 SUPERFAMILY RING/U-box 486 541 - -
Gma19g01702 549 Pfam Ring finger domain 495 538 IPR001841 -
Gma19g01702 549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 463 542 IPR013083 -
Gma19g01702 549 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 545 - -
Gma19g01702 549 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 545 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01702 Gma-Chr19 46287062 46296098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01702 1 548 C3H Transcription Factor Family AT2G37150 44.784 3.62e-126 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01702 - - gmx:100803627 1130.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01702 19 46287062 46296098 Gma19g01702 19 46287062 46296098 ECH
Gma19g01702 19 46287062 46296098 Gma03g01653 03 42631859 42634545 GST