LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma19g01689	ATGGGGAGAGAGAAGGTGGGAGACACAGGGAAGGGAAAGAAGGAAAAGGGAGGGTTGAAGAAATTTGAAGTTGGGACAAAAGGATATTTTGACAATAAGGTAGGGATCAATAGTAGCACCCTTATAAATAAAGTCTACGTTTATGAATCTCTTGAACCCAACTTGGTTATAACAAGGATGCCAAGGACAACACCCATTAGGTTAGGGTTTTACACTGCGGCAGCTACTTCGGCTCCATCTTCTTCGATCTCTCAAACTCTATCGGCGCAGAACCAATCCTATATCACTATGGGGAAGACACATGGAATGGGAGCTGCCCGCAAGCTGAAGTCTCACCGTAGGAGACAAAGGTGGGCTGACAAGTCATACAAAAAGTCTCATCTTGGAAATGAATGGAAGAAGCCTTTTGCTGGTTCATCCCATGCAAAGGGTATTGTTCTTGAAAAGATAGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTCGAAAATGTGCCAGGGTTCAACTCATCAAAAATGGGAAGAAGATTGCTGCATTCGTGCCAAATGATGGTTGCTTAAATTACATTGAAGAGAATGATGAAGTCTTGATAGCTGGATTTGGACGAAAGGGTCATGCCGTGGGTGATATTCCTGGAGTCAGATTCAAGGTCGTGAAGGTTTCTGGTCCTCTTGAAGACAGATAA	684	0.4401	MGREKVGDTGKGKKEKGGLKKFEVGTKGYFDNKVGINSSTLINKVYVYESLEPNLVITRMPRTTPIRLGFYTAAATSAPSSSISQTLSAQNQSYITMGKTHGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGPLEDR	227

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma19g01689	227	SUPERFAMILY	Nucleic acid-binding proteins	116	219	IPR012340	-
	Gma19g01689	227	Gene3D	-	121	226	IPR012340	-
	Gma19g01689	227	Pfam	Ribosomal protein S12/S23	127	222	IPR006032	GO:0003735\|GO:0005840\|GO:0006412
	Gma19g01689	227	PANTHER	BNACNNG03140D PROTEIN	90	222	-	-
	Gma19g01689	227	TIGRFAM	uS12_E_A: ribosomal protein uS12	102	221	IPR005680	GO:0003735\|GO:0006412\|GO:0015935
	Gma19g01689	227	ProSitePatterns	Ribosomal protein S12 signature.	155	162	IPR006032	GO:0003735\|GO:0005840\|GO:0006412
	Gma19g01689	227	CDD	Ribosomal_S23	122	222	IPR005680	GO:0003735\|GO:0006412\|GO:0015935
	Gma19g01689	227	PANTHER	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	90	222	IPR006032	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma19g01689	Gma-Chr19	46198888	46202587	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma19g01689	97	222	Cytoplasmic Ribosomal Protein Gene Family	AT5G02960	94.444	1.07e-83	243

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma19g01689	K02973		-	gmx:100306064	259.996

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma19g01689	19	46198888	46202587	Gma03g01641	03	42540599	42542397	ECH
	Gma19g01689	19	46198888	46202587	Gma19g01689	19	46198888	46202587	ECH
	Gma19g01689	19	46198888	46202587	Gma11g01340	11	11621632	11622186	ECH
	Gma19g01689	19	46198888	46202587	Gma12g00644	12	5404338	5404942	ECH
	Gma19g01689	19	46198888	46202587	Gma03g01641	03	42540599	42542397	GST
	Gma19g01689	19	46198888	46202587	Gma10g00463	10	4490111	4491618	PCT
	Gma19g01689	19	46198888	46202587	Gma13g01171	13	25895266	25897032	PCT
	Gma10g00463	10	4490111	4491618	Gma19g01689	19	46198888	46202587	PCT
	Gma13g01171	13	25895266	25897032	Gma19g01689	19	46198888	46202587	PCT