Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01683 ATGGACGGGCCTGGACAAGTAAATATATTTATATTCAACGTCTCAAACCCCAAACCCTTAAACCCTAGTTTTGTGAATACCACACCCATGGCAGCAGCAGCTCGCCCTCTCGTCTCCGTCCAAACCCTAGAGGGCGATGCAGCCCCCACCGTCCCTCTCCCCGACGTCATGAAGGCCTCCATTCGTCCTGACATCGTCAATTTCGTTCATTCCAACATTTCTCGCAACAGCCGCCAACCCTACGCCGTCAGCAAGCGCGCCGGCCACCAAACCTCCGCCGAGTCCTGGGGCACCGGCCGCGCCGTCTCACGTATTCCGCGAGTCCCCGGCGGAGGAACCCACCGTGCCGGCCAGGGAGCCTTCGGAAACATGTGCCGCGGCGGCCGCATGTTCGCCCCGACCAAGATCTGGCGCCGCTGGCACCGCAAGATCAACGTCCAGCAGAAGCGCCACGCCGTCGTCTCCGCCATTGCCGCCTCCGCAATCCCCTCCCTGGTCCAGGCTCGCGGCCACCGCATCGAGTCCGTCCCTGAACTCCCCCTCGTCGTCAGCGACACCGTCGAAAGCGTCGAGAAATCCAAAGAAGCCGTGAAAATTCTCCAGAAAATCGGCGCATTCCCCGACGCGGAGAAAGCGAAACTGAGCCACGGAATTCGTCCCGGGAAGGGAAAAATGAGGAACCGCAGGCACATTTCACGGAAGGGTCCTCTTATCGTGTACGGAACAGAAGGTGCTAAGGTCGTTAAAGCCTTCAGGAACATTCCTGGTGTTGAGGTGGCAAATGTTGATAGGCTCAACCTTCTGAAGCTGGCACCCGGAGGCCACCTCGGGAGGTTCATTATTTGGACCAAGTCCGCGTTTGAGAAATTGGACTCTATCTATGGATCCTTCCATAAGGCTTCTGAGAAGAAAAAGGGCTACCTGCTTCCTAGGCCCAGAATGGTTAACTCGGACTTGGCCCGCATCATTAACTCCGATGAGGTCCAGTCCGTGGTCAGGCCCATTAAGAAAGATGTTAAGAGAGCTCCTCTCAAGAAGAACCCTCTCGCCAACCTCAATGCGATGTTGAAGCTCAATCCCTATGCCAAGACCGCTAAGAGAATGGCTCTTCTCGCTGAGAAGCAGCGCATTGTGGCAAAGAAGGAGAAGCTTGATAAGAAGCGCAACATTGTCTCCAAGGAGGAGGCTTCTGCTATCAAGTCTGCTGGAAAATCGTGGTATCAAACTATGGTGTCTGACTCTGATTATGCAGATTTTGACAACTTCTCTAAGTGGCTAGGTGTTTCCCAGTAA 1293 0.5514 MDGPGQVNIFIFNVSNPKPLNPSFVNTTPMAAAARPLVSVQTLEGDAAPTVPLPDVMKASIRPDIVNFVHSNISRNSRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVQQKRHAVVSAIAASAIPSLVQARGHRIESVPELPLVVSDTVESVEKSKEAVKILQKIGAFPDAEKAKLSHGIRPGKGKMRNRRHISRKGPLIVYGTEGAKVVKAFRNIPGVEVANVDRLNLLKLAPGGHLGRFIIWTKSAFEKLDSIYGSFHKASEKKKGYLLPRPRMVNSDLARIINSDEVQSVVRPIKKDVKRAPLKKNPLANLNAMLKLNPYAKTAKRMALLAEKQRIVAKKEKLDKKRNIVSKEEASAIKSAGKSWYQTMVSDSDYADFDNFSKWLGVSQ 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01683 430 PANTHER 60S RIBOSOMAL PROTEIN L4 20 430 IPR045240 -
Gma19g01683 430 SUPERFAMILY Ribosomal protein L4 37 292 IPR023574 GO:0003735|GO:0005840|GO:0006412
Gma19g01683 430 Pfam 60S ribosomal protein L4 C-terminal domain 305 376 IPR025755 -
Gma19g01683 430 MobiDBLite consensus disorder prediction 80 98 - -
Gma19g01683 430 PANTHER BNAC03G35890D PROTEIN 20 430 - -
Gma19g01683 430 Gene3D - 32 333 IPR023574 GO:0003735|GO:0005840|GO:0006412
Gma19g01683 430 MobiDBLite consensus disorder prediction 80 121 - -
Gma19g01683 430 ProSitePatterns Ribosomal protein L1e signature. 145 171 IPR013000 -
Gma19g01683 430 Pfam Ribosomal protein L4/L1 family 51 291 IPR002136 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01683 Gma-Chr19 46124864 46126573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01683 31 430 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 78.960 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01683 K02930 - gmx:100796712 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01683 19 46124864 46126573 Gma19g01683 19 46124864 46126573 ECH
Gma19g01683 19 46124864 46126573 Gma03g01636 03 42475992 42477440 GST
Gma19g01683 19 46124864 46126573 Gma10g00456 10 4415389 4418362 PCT
Gma19g01683 19 46124864 46126573 Gma13g01165 13 25825626 25828139 PCT
Gma10g00456 10 4415389 4418362 Gma19g01683 19 46124864 46126573 PCT
Gma13g01165 13 25825626 25828139 Gma19g01683 19 46124864 46126573 PCT