Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01680 ATGCCGCCGAAGCAGCAATCAAAAGCTGATCTTGTGAAGAAGCAGAAGATCGTTGAAGACAAAACCTTCGGTCTCAAAAACAAGAACAGGAGCAAAAATGTCCAGAAATACGTCCAGAACCTCAAGCAATACGTGCAACCTAAACTCGACCCTTCAAAACTCACTGCAAAGAAAAAGAAGGAAGAGAAGGCCAAGGACAAGGAGTTAAATGATTTGTTCAAAATTGCTGTTAGTCAGCCTAAGGTGCCACTCGCTAATATCGTCTCAGTATCATTGTGGGCTTGTGTTGATCCTAAGTCCATATTGTGTGAGTTTTTCAAAGTGGGGCAGTGTACCAAGGGCTTCAAGTGCAAGTTCTCCCATGATTTGAATGTTCAGAGGAAAGGGGAAAAATTGACCTTTATAGTGATAAAAACAATGGAGGATTGGGATCAAGACACCTTGGAGAAGGTTGTAGAGTCTAAGAAAACCGAGTATAATCAGAACAAACCAACTGACATGGTAAGTCTGTACTTTTTGGACACAGTGGAGAAGAAGCAATATGGTTGGTTCTGGGTCTGCCCCAATGGCAGTAAGAATTGCCACTATAGACATGCCCTTCCCCTTGGATATGTTTTGAAATCTCAAATGAAGGCTCTATTAGAGGAGGAAAGTGAAAAAATAACAATAGAGGAGGAGATTGAAAATCAGCGTGCCAAAGTGACAACTACAACTCCTATGACTCCTGAATTATTCATGCAATGGAAGAAAAAGAAAATGGAAGAGAGAGAGGCCAATCTTGGTGCACAACAGGCAGAGAGGGCTAAGAATGTTCGCATGAGCTATTTTTGTCAGATGCTAGCTTGTTTTGTGGATGATGATGAAGCATATGACAAGTACCAAAGAGAACCAGAATCTGAATCTGGCAACACTGAACAGAATGCGAATGGTAATGCTACCGAAGATGGTCCTGGCACCTCAATAGCTAGTGCTGATGTTGACGATACTGACGATGTTGATGGCGAACTGGACATGGACGAGTTGGATGAATTAAGCAAGCTTATCAAAGATATCAATTCAAATAAAGGAGTAAGGAGCTGA 1080 0.4176 MPPKQQSKADLVKKQKIVEDKTFGLKNKNRSKNVQKYVQNLKQYVQPKLDPSKLTAKKKKEEKAKDKELNDLFKIAVSQPKVPLANIVSVSLWACVDPKSILCEFFKVGQCTKGFKCKFSHDLNVQRKGEKLTFIVIKTMEDWDQDTLEKVVESKKTEYNQNKPTDMVSLYFLDTVEKKQYGWFWVCPNGSKNCHYRHALPLGYVLKSQMKALLEEESEKITIEEEIENQRAKVTTTTPMTPELFMQWKKKKMEEREANLGAQQAERAKNVRMSYFCQMLACFVDDDEAYDKYQREPESESGNTEQNANGNATEDGPGTSIASADVDDTDDVDGELDMDELDELSKLIKDINSNKGVRS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01680 359 Pfam DRG Family Regulatory Proteins, Tma46 220 293 IPR032378 -
Gma19g01680 359 Gene3D - 96 209 - -
Gma19g01680 359 MobiDBLite consensus disorder prediction 300 318 - -
Gma19g01680 359 SUPERFAMILY CCCH zinc finger 98 122 IPR036855 GO:0046872
Gma19g01680 359 ProSiteProfiles Zinc finger C3H1-type profile. 97 124 IPR000571 GO:0046872
Gma19g01680 359 Gene3D - 210 278 - -
Gma19g01680 359 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 345 - -
Gma19g01680 359 Coils Coil 213 233 - -
Gma19g01680 359 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 21 1 345 - -
Gma19g01680 359 SMART c3hfinal6 177 200 IPR000571 GO:0046872
Gma19g01680 359 SMART c3hfinal6 97 123 IPR000571 GO:0046872
Gma19g01680 359 MobiDBLite consensus disorder prediction 293 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01680 Gma-Chr19 46109090 46111778 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma19g01680 DFRP_C 5.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01680 - - gmx:100806617 526.939