Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01645 ATGTTAGGAATGAAGAGACATAGAGATAATGAAGGGTCAGAGAGCTTAGATTTGGCAAAATGTCTTGTGCTGTTCTCTTGTCCAATAGAAAGCAACAAGGCACAACAGAAAGGTTTTGGGGCTGTGGAATTTGAGTGCAAGACGTGCAGCCGCAAGTTCTCTTCTTTTCAAGCACTGGGAGGGCACAGGGCAAGCCACAAGAGGCAGAAGCTAGAGGGGGAAGAACTCAAAGAACAAGCCAAAACTCTTAGCTTGTGGAACAAACCAAAAATGCACGAGTGCTCCATTTGTGGACTTGAATTCTCTCTGGGCCAGGCTCTGGGTGGCCACATGAGAAAACACAGAGCTGCTCTCAACGAAGGGTTTCCTATAATTCCTTCTATCGACCAAGTTATTGCGAAAATCCCGGTTCTGAAAAGGTCGAATAGCACCAGAGTTATGTGCTTGGACTTGGAGTTACACCTGTAG 468 0.4615 MLGMKRHRDNEGSESLDLAKCLVLFSCPIESNKAQQKGFGAVEFECKTCSRKFSSFQALGGHRASHKRQKLEGEELKEQAKTLSLWNKPKMHECSICGLEFSLGQALGGHMRKHRAALNEGFPIIPSIDQVIAKIPVLKRSNSTRVMCLDLELHL 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01645 155 SUPERFAMILY beta-beta-alpha zinc fingers 44 114 IPR036236 -
Gma19g01645 155 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Gma19g01645 155 Gene3D Classic Zinc Finger 42 114 - -
Gma19g01645 155 PANTHER ZINC FINGER PROTEIN ZAT5 4 155 - -
Gma19g01645 155 SMART c2h2final6 92 114 IPR013087 -
Gma19g01645 155 SMART c2h2final6 44 66 IPR013087 -
Gma19g01645 155 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Gma19g01645 155 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 4 155 - -
Gma19g01645 155 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Gma19g01645 155 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Gma19g01645 155 Pfam C2H2-type zinc finger 44 69 - -
Gma19g01645 155 Pfam C2H2-type zinc finger 92 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01645 Gma-Chr19 45854282 45854971 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01645 4 153 C2H2 Transcription Factor Family AT2G37430 42.857 1.35e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma19g01645 zf-C2H2_6 8.5e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01645 - - gmx:100500607 317.775
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01645 19 45854282 45854971 Gma03g01598 03 42222034 42222860 GST
Gma19g01645 19 45854282 45854971 Gma10g00424 10 4073948 4074786 PCT
Gma19g01645 19 45854282 45854971 Gma13g01131 13 25450472 25451053 PCT
Gma10g00424 10 4073948 4074786 Gma19g01645 19 45854282 45854971 PCT
Gma13g01131 13 25450472 25451053 Gma19g01645 19 45854282 45854971 PCT