Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01600 ATGGCCGTCGATGAAATTGAAATATTGTCTTCGACGTTGTTTTCTTCTTCTTCTTCGGGATCGTTTGAGATCCTTTGGAGTGCGATCCTCGGATTGCCTTTGTTGGAACTGGTGGCAATCTGTGCCAACCTGACACTGTTTATTCTCTTTCTCGTCGTTGTTTCGGCGAGGAAGGTGCTTGTGTGTGTATGGGGAGGAGTTAGATTCGGTAAGGAGAACGGAACCGGCAATGCCAGCCCCGGTTGTGTTAGTGTTGATTTGGAAACACGTGACGTTCGGATTGAAACGTGGTTCAAGTTGTCGGTGTTGTCTTGTTTCTATGTTCTGTTGGTGCAAGTTTTGGTCTTGGGGTTTGATGGGGTTGCTTTGATTAGAGGAAGGGATTTGGATTTGGATTTGGGTTTGGCTCTTCTTTCTGTGCCTCTTGTGCAGGGTTTAGCTTGGGTTGTGTTGAGCTTCTCGGCTTTGCAATGCAAATTCAAGGCGTGTGAGAGGTTTCCAGTTTTGCTTAGAGTTTGGTTATTTGTGTTGTTCGTTATTTGTTTGTGTGGTTTGTATGTTGATGGAAGGGGGGTTTGGATGGAAGGTTCCAAGCACCTGCGTTCTCATGTTGTGGCGAATTTCGCCGTCACTCCTGCTCTTGCCTTTTTGTGTATTGTGGCAATTAGGGGTGTTACTGGTATAAAGGTTTTTAGGAGTTCTGAGGAGCAACAGCCATTGCTTGTTGATGAGGATCCCGGGTGTCTCAAGGTTACTCCTTATAGTGATGCTGGACTTTTTAGCTTGGCCATTTTGTCTTGGTTGAATCCACTTCTTTCCATTGGGGCAAAAAGGCCGCTTGAGCTTAAGGACATTCCCCTTGTTGCGCCGAAAGACCGATCCAAGACAAATTATAAGGTTTTGAATTCTAATTGGGAGAGGTTGAAGGCTGAAAACCAATCCGGGCAGCCTTCTTTGGCTTGGGCACTTCTCAAATCCTTCTGGAAGGAGGCGGCTTGTAACGCTGTGTTTGCTGGTGTCACTACTCTTGTCTCGTATGTTGGTCCATATATGATAAGTTACTTTGTTGATTACTTGGTTGGCAAAGAGATTTTCCCACATGAGGGGTATGTCCTTGCAGGGGTATTCTTTGTGGCAAAGCTTGTGGAGACCTTTACTACTAGGCAGTGGTATCTTGGGGTGGATATCTTGGGTATGCATGTTAGGTCGGCTCTAACTGCAATGGTATATCGAAAGGGGTTAAGGATATCAAGCTTGGCCAAGCAAAGTCACACGAGCGGGGAGGTTGTTAACTACATGGCTATTGATGTTCAGAGGGTAGGGGACTACTCTTGGTATCTTCATGACATGTGGATGCTTCCTCTGCAGATTGTTCTTGCCCTTGCGATTTTGTATAAGAATGTTGGAATTGCTTCTATTGCAACACTGATTGCTACAATAATTTCCATCGCGGTCACTGTTCCTATTGCCAGGATCCAAGAAAATTATCAAGACAAATTAATGGCTGCTAAGGATGAAAGGATGAGAAAAACATCTGAGTGCCTGAGGAATATGAGGATTCTCAAACTTCAAGCTTGGGAGGATAGATATAGAGTGAAATTGGAGGAAATGCGAGGAGTAGAGTTCAAGTGGCTTCGGAAAGCTCTCTATTCTCAGGCTTTCATAACTTTCATATTCTGGAGCTCCCCTATATTTGTTTCAGCAGTCACTTTTGGTACTTCCATATTGTTGGGTGGTCAGCTGACTGCTGGTGGTGTACTTTCTGCTTTGGCTACTTTCAGGATCCTGCAAGAACCTTTGAGGAATTTTCCGGACTTGGTGTCAACAATGGCTCAGACAAAGGTTTCTCTTGACCGATTATCTGGTTTCCTGCTGGAGGAGGAATTGCAGGAAGATGCAACTATTGTCTTGCCACAAGGCATTACTAACATTGCTATAGAAATTAAGGGTGGTGTCTTCTGTTGGGACCCTTCTTCATCTTCTAGACCTACCCTATCAGGGATAAGTATGAAAGTTGAAAGAAGGATGCGTGTGGCTGTTTGTGGTATGGTTGGTTCAGGGAAATCAAGTTTTCTTTTGTGCATCCTTGGAGAGATTCCTAAAATTTCTGGTGAAGTTAGAGTGTGTGGCTCTTCTGCATATGTCTCCCAATCAGCATGGATACAATCAGGAACTATAGAAGAAAATATCCTCTTTGGAAGCCCAATGGACAAAGCAAAGTACAAGAATGTTCTTCATGCTTGTTCACTGAAAAAGGACCTAGAACTTTTCTCACATGGTGATCTTACAATTATTGGGGATAGAGGTATAAACCTGAGTGGTGGCCAGAAGCAGCGGGTTCAGCTGGCTCGGGCACTCTACCAAGATGCTGATATTTATCTTCTTGATGATCCCTTCAGTGCAGTTGATGCTCACACTGGATCAGACTTGTTTAGGGAGTATATATTGACAGCACTTGCAGATAAAACAGTCATTTATGTGACCCATCAAGTTGAATTTCTTCCTGCTGCTGATTTGATATTGGTTCTCAAAGAAGGATGCATCATACAGTCAGGAAAGTATGACGATCTTTTACAAGCAGGAACAGATTTTAATACTCTGGTTTCAGCTCACAATGAAGCCATAGAGGCCATGGATATCCCTACTCACTCTGAAGATTCAGATGAAAATTTATCCCTGGAGGCATGTGTTATGACCAGTAAGAAATCCATTTGTTCTGCAAATGATATAGACAGTTTGGCAAAGGAAGTGCAAGAGGGATCATCTATTTCAGATCAAAAAGCAATTAAAGAGAAGAAGAAAGCAAAACGATCGAGAAAGAAACAGCTTGTTCAGGAAGAGGAGAGGATTAGAGGTAGAGTCAGCATGAAGGTGTATTTGTCATACATGGCAGCAGCATATAAAGGCTTATTGATTCCACTCATAATCATTGCACAAACATTATTTCAGTTCCTTCAGATTGCTAGCAATTGGTGGATGGCTTGGGCTAATCCTCAAACAGAAGGAGACCTGCCCAAAGTAACTCCCTCAGTTCTTCTTCTTGTTTATATGGCCCTTGCTTTTGGCAGCTCATGGTTTATATTTGTAAGGGCTGTTCTGGTGGCTACGTTTGGTCTTGCAGCTGCACAGAAGCTATTTTTGAAAATGCTTAGAAGTGTTTTCCATGCACCAATGTCTTTCTTTGACTCTACACCAGCTGGAAGGATTTTGAATCGGGTATCAATTGATCAAAGTGTTGTGGATCTTGACATTCCTTTTAGACTTGGTGGGTTTGCTTCAACAACAATACAGCTTATTGGTATTGTTGGTGTAATGACAGAAGTTACGTGGCAAGTTTTGCTCTTAGTTGTCCCAATGGCTGTTGCTTGTTTGTGGATGCAGAAATACTACATGGCTTCCTCAAGGGAACTGGTTCGAATTGTTAGCATCCAGAAGTCTCCAATTATACATCTTTTTGGTGAATCTATTGCTGGAGCATCCACCATCAGGGGTTTTGGACAAGAAAAAAGGTTCATGAAGCGAAACCTCTATCTTCTTGATTGCTTTGCACGACCATTCTTCTGCAGTCTTTCTGCAATTGAGTGGCTCTGCCTGCGGATGGAGTTACTGTCAACCTTTGTATTTGCTTTCTGTATGGTATTACTTGTGAGTTTTCCTCGTGGAAGTATCGACCCCAGCATGGCTGGACTTGCTGTGACATATGGCCTGAATTTAAATGCACGTCTATCACGGTGGATACTCAGCTTTTGCAAACTTGAAAATAAAATTATATCTATTGAGAGAATTTATCAGTACAGCCAAATTCCTAGTGAAGCACCCACAGTTATTGAAGATTATCGCCCTCCATCCTCATGGCCTGAAAATGGGACAATTGAAATAATTGATTTGAAGATTCGTTACAAGGAGAATCTTCCTTTGGTGCTTTATGGAGTAACATGCACATTTCCTGGTGGAAAGAAGATTGGAATAGTAGGACGTACTGGCAGTGGAAAATCTACTTTAATTCAGGCGTTATTTCGATTGATTGAACCAACAAGTGGGAGTATCCTTATAGACAACATTAATATTTCAGAGATTGGCCTTCATGACCTTCGAAGCCATCTCAGTATCATACCACAAGATCCAACCTTATTTGAAGGTACCATTCGAGGCAATCTTGATCCTCTGGATGAGCACTCAGATAAAGAGATTTGGGAGGCACTTGATAAGTCTCAGCTTGGAGAGGTTATCCGTGAGAAAGGACAACAGCTTGATACGCCAGTTCTAGAAAATGGAGATAATTGGAGTGTAGGACAGCGACAACTTGTTGCTCTGGGCCGAGCTCTGCTGCAGCAGTCAAGAATACTTGTACTAGATGAAGCAACAGCATCAGTTGATACCGCCACAGATAATCTTATACAGAAGATTATCCGAAGTGAGTTCAAAGAATGCACTGTTTGCACCATTGCACATCGAATACCTACTGTCATTGACAGTGATCTAGTTCTTGTGCTCAGTGATGGTCGAGTTGCAGAGTTCAACACTCCTTCAAGACTATTAGAGGATAAGTCATCCATGTTTCTGAAGCTGGTGACTGAGTACTCATCACGTTCAAGTGGCATACCAGACTTTTAG 4614 0.4278 MAVDEIEILSSTLFSSSSSGSFEILWSAILGLPLLELVAICANLTLFILFLVVVSARKVLVCVWGGVRFGKENGTGNASPGCVSVDLETRDVRIETWFKLSVLSCFYVLLVQVLVLGFDGVALIRGRDLDLDLGLALLSVPLVQGLAWVVLSFSALQCKFKACERFPVLLRVWLFVLFVICLCGLYVDGRGVWMEGSKHLRSHVVANFAVTPALAFLCIVAIRGVTGIKVFRSSEEQQPLLVDEDPGCLKVTPYSDAGLFSLAILSWLNPLLSIGAKRPLELKDIPLVAPKDRSKTNYKVLNSNWERLKAENQSGQPSLAWALLKSFWKEAACNAVFAGVTTLVSYVGPYMISYFVDYLVGKEIFPHEGYVLAGVFFVAKLVETFTTRQWYLGVDILGMHVRSALTAMVYRKGLRISSLAKQSHTSGEVVNYMAIDVQRVGDYSWYLHDMWMLPLQIVLALAILYKNVGIASIATLIATIISIAVTVPIARIQENYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRVKLEEMRGVEFKWLRKALYSQAFITFIFWSSPIFVSAVTFGTSILLGGQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRLSGFLLEEELQEDATIVLPQGITNIAIEIKGGVFCWDPSSSSRPTLSGISMKVERRMRVAVCGMVGSGKSSFLLCILGEIPKISGEVRVCGSSAYVSQSAWIQSGTIEENILFGSPMDKAKYKNVLHACSLKKDLELFSHGDLTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSDLFREYILTALADKTVIYVTHQVEFLPAADLILVLKEGCIIQSGKYDDLLQAGTDFNTLVSAHNEAIEAMDIPTHSEDSDENLSLEACVMTSKKSICSANDIDSLAKEVQEGSSISDQKAIKEKKKAKRSRKKQLVQEEERIRGRVSMKVYLSYMAAAYKGLLIPLIIIAQTLFQFLQIASNWWMAWANPQTEGDLPKVTPSVLLLVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFLKMLRSVFHAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLIGIVGVMTEVTWQVLLLVVPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLSAIEWLCLRMELLSTFVFAFCMVLLVSFPRGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPTVIEDYRPPSSWPENGTIEIIDLKIRYKENLPLVLYGVTCTFPGGKKIGIVGRTGSGKSTLIQALFRLIEPTSGSILIDNINISEIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLDEHSDKEIWEALDKSQLGEVIREKGQQLDTPVLENGDNWSVGQRQLVALGRALLQQSRILVLDEATASVDTATDNLIQKIIRSEFKECTVCTIAHRIPTVIDSDLVLVLSDGRVAEFNTPSRLLEDKSSMFLKLVTEYSSRSSGIPDF 1537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01600 1537 CDD ABC_6TM_ABCC_D1 333 620 IPR044746 GO:0140359
Gma19g01600 1537 CDD ABCC_MRP_domain1 646 846 - -
Gma19g01600 1537 SMART AAA_5 674 855 IPR003593 -
Gma19g01600 1537 SMART AAA_5 1317 1502 IPR003593 -
Gma19g01600 1537 Pfam ABC transporter 1310 1456 IPR003439 GO:0005524
Gma19g01600 1537 CDD ABCC_MRP_domain2 1289 1509 - -
Gma19g01600 1537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 642 869 IPR027417 -
Gma19g01600 1537 SUPERFAMILY ABC transporter transmembrane region 321 626 IPR036640 GO:0005524|GO:0016021
Gma19g01600 1537 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1291 1525 IPR003439 GO:0005524
Gma19g01600 1537 ProSitePatterns ABC transporters family signature. 772 786 IPR017871 GO:0005524
Gma19g01600 1537 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 82 1537 - -
Gma19g01600 1537 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 82 1537 - -
Gma19g01600 1537 Coils Coil 493 513 - -
Gma19g01600 1537 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 646 870 IPR003439 GO:0005524
Gma19g01600 1537 Gene3D - 1274 1527 IPR027417 -
Gma19g01600 1537 Gene3D - 629 891 IPR027417 -
Gma19g01600 1537 Pfam ABC transporter 665 799 IPR003439 GO:0005524
Gma19g01600 1537 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 974 1244 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma19g01600 1537 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 335 612 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma19g01600 1537 Pfam ABC transporter transmembrane region 974 1216 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma19g01600 1537 Pfam ABC transporter transmembrane region 336 600 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma19g01600 1537 SUPERFAMILY ABC transporter transmembrane region 971 1271 IPR036640 GO:0005524|GO:0016021
Gma19g01600 1537 CDD ABC_6TM_ABCC_D2 972 1266 IPR044726 GO:0140359
Gma19g01600 1537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1283 1521 IPR027417 -
Gma19g01600 1537 Coils Coil 929 949 - -
Gma19g01600 1537 Gene3D ABC transporter type 1, transmembrane domain 304 628 IPR036640 GO:0005524|GO:0016021
Gma19g01600 1537 Gene3D ABC transporter type 1, transmembrane domain 933 1272 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01600 Gma-Chr19 45359706 45367177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01600 656 863 Calmodulin-binding Proteins AT2G36910 31.278 2.20e-18 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01600 - - gmx:100814850 2925.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01600 19 45359706 45367177 Gma19g01600 19 45359706 45367177 ECH
Gma19g01600 19 45359706 45367177 Gma03g01546 03 41679371 41686543 GST
Gma19g01600 19 45359706 45367177 Gma13g01082 13 24948513 24957495 PCT
Gma13g01082 13 24948513 24957495 Gma19g01600 19 45359706 45367177 PCT