Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01595 ATGACAACTCTTCTTCTCAGGATTCTTCATCTGACCTTGAATTTTCTCTCTCCCTATGCCCCCGCTAATTCCTCCTTCACTTCTCTTCCCATTACCGCTCCCAGTCAAGTTGTTGGATGGCCTCCCCTTGGAGCATATAGAATGAACAGCTATAATAGCCATGCAAAATCACCAGCCACAGAAGTATTCAATTCTACACTTGACAAAAGAGCAAGCAATAGTGCTGGGGTTAGGAAGAGTGCAGATGGTGGCAGTGATAGTAGCAACATTATTTCCAAAGAAAAAGGAAACCTCAGGACTTCCCTGTTTGTGAAAGTAAAAATGGACGGGATACCAATCGGAAGGAAGGTTGATTTGGGTGCTCACGATTCTTATGAAACCTTAGCTCAAACCTTGGAGGATATGTTTGATGAATCAACTACAGTCCTCACTCACAAAGTAGGATCAAATGGAGAAGATCATGGTACTGAAGTTGGAACAGATGGGCATTCAAAATTGCTGGATGGTTCTTCTGACTTTGTGCTCACTTATGAAGACAAGGAAGGAGACTGGGTGCTTGTTGGAGATGTTCCTTGGTGTTACTTTGCAGCTCCAAGATTGGAAGAAAAGAACAGAAGATCGAATACAAGCTCATATAGATAA 642 0.4252 MTTLLLRILHLTLNFLSPYAPANSSFTSLPITAPSQVVGWPPLGAYRMNSYNSHAKSPATEVFNSTLDKRASNSAGVRKSADGGSDSSNIISKEKGNLRTSLFVKVKMDGIPIGRKVDLGAHDSYETLAQTLEDMFDESTTVLTHKVGSNGEDHGTEVGTDGHSKLLDGSSDFVLTYEDKEGDWVLVGDVPWCYFAAPRLEEKNRRSNTSSYR 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01595 213 Pfam AUX/IAA family 31 196 IPR033389 -
Gma19g01595 213 Gene3D - 96 209 - -
Gma19g01595 213 SUPERFAMILY CAD & PB1 domains 97 195 - -
Gma19g01595 213 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 28 195 IPR003311 GO:0005634|GO:0006355
Gma19g01595 213 ProSiteProfiles PB1 domain profile. 101 205 IPR000270 GO:0005515
Gma19g01595 213 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 28 195 - -
Gma19g01595 213 MobiDBLite consensus disorder prediction 65 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01595 Gma-Chr19 45323876 45328285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01595 22 196 B3 DNA Binding Superfamily AT3G61830 28.409 6.00e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma19g01595 AUX_IAA 1.6e-44 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01595 K14484 - gmx:100813788 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01595 19 45323876 45328285 Gma19g01595 19 45323876 45328285 ECH
Gma19g01595 19 45323876 45328285 Gma03g01541 03 41650959 41655331 GST
Gma19g01595 19 45323876 45328285 Gma10g00379 10 3596128 3599997 PCT
Gma19g01595 19 45323876 45328285 Gma13g01077 13 24915698 24919758 PCT
Gma10g00379 10 3596128 3599997 Gma19g01595 19 45323876 45328285 PCT
Gma13g01077 13 24915698 24919758 Gma19g01595 19 45323876 45328285 PCT