Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01579 ATGGATGATTCTGGAAGTAAAACTAAACTGTTGAATCCATGGATGCTCCACTTCCAGAAACTCGCTCTCGAACTCAAGTGCCCTCTCTGTTTGAGTTTGTTCAAGAGGCCGGTGTTACTTCCATGCAACCACTTGTTCTGCAATTCATGTTTGGCTGATTGCATAACGGCTGGGCCTGGATGTGCTGTTTGTAAGGCAACGTATGCTCAAACAGATGTTAGGCATGTGCCTTTTGTGGAAAACGTGGTGGCAATATATAGAAGCTTGGATGCCACTTTTTGTGCTAGTTTGTTTCAGCCATGTTCTTCTGGTGATGGGAGGGTTTTGGAGCCGTGCCAAGCAATTCTTAATTCAACTTCTAGTAGTTTAAAAGCTGCCAAGCTTCCTCGGAATTTAACTAATTCAAATGAGGTTGGGGTTGGCAAGAATTTCAAATCCAAGAGTGTGGTGCATGACAAAGCAGAGGAGTTTGAGTTGTCTCGTGAGAGAGGGAAGCCCAATCCAATGCAATCTTCCCATATGGAACTTGGTGGCCGCGAAGAGTGTGGAGTTATGGAAATGGATGTGAATCAAGTGACACAATCAGCACCAGATAGCCCACCCTTTTGTGATACCAAAGGTTCAGATAATGACTTCAGTGATCAAGGCAGTGAGCATCCATTACTTCCTGGTAGATTGGAAAATTCTTCACTAAAGAGAGCTGGCACAGGAAATGGAAATTTGAAAGAAAGAATGGGACAGCTCAGGTCTGAAAGTTCAGCCTCTGAAACTGAGGGTCTTGCAAGGGATCTCAAGAGACAGAAGAATCTGGACTTTAAACCTGGAAAGGAACCTGGTGCACCATTGCCCAAAATTGACATGTGTCCAACCGGAAGGATCTGTTCATTTTGCCAATCCTCTAAAATCTCAGAGGCTACTGGACCAATGCTGCATTATGCAAATGGAAACTTAGTTACAGGAGATGCAGCAATGAAACCAAATGTCATACCTGTGCATAGAATTTGCATTGACTGGGCACCACAAGTGTACTTTGTTGGTGAAGTTGTTAAGAATTTGAAGGCAGAGGTGGCAAGGGGAGCAAAACTTAAATGCAGTAAATGTAATCTAAAGGGAGCTGCTCTTGGTTGCTATGTCAAATCCTGTAGAAGAACGTATCATGTTCCTTGTGCAATGGACATCTCAGATTGCCGTTGGGATCATGAGGATTTTCTCTTGCTCTGTCCTGTCCATTCAAATGTCAAATTTCCATGTGAGAAAATCAGGTCCAAGAAAAAGGCAACACAGAAGCATCCCACTTTTTCTCATCTGCCATCTCATCACTCAAATCGTCTTGAAGCTTCCCAGGATGCTAGTAAAAAATTGGTATTTTGTGGATCTGCTCTATCAAATGAAGAAAAGGTATTTTTGATCAATTATGCAAGCAAGGTTGGTGCTACTGTGACCAAGTTCTGGACCTCAAATGTCACCCATGTAATTGCAGCAACTGATGCACATGGAGCATGCTCCAGGACGTTGAAAGTTCTGATGGCAATTCTAAATGGACGATGGGTTCTAAAAATGGATTGGATAAAAGCATGCATGCAAGAGATAAATCCTGTAGAGGAAGAACCGTATGAAATTAATCTTGACAATCAAGGGTGTCAAGGTGGCCCAAAAGCTGGCAGACTTAGGGCATTGGCCAATGAGCCCAAGCTATTCAGTGGCTTAAAGTTTTATTTTTCTGGAGATTACGTGTCAACTTATAAGGAAGATCTTGAAGAATTAATTGAAGTGGGGGGAGGTACTGTTTTGAGAATCAAGGAAGAATTGGAAGCACACAGACATGAATGCAAAGGGGATTCTTCAAAGTTGCTAGTTGTTTACAACCTTGATCCCCCACAAGGATGCAAGTTGGGGGAGGAAGTTTCAATTCTTTGGCAAAGGCTAAACGACGCAGAGGATTTAGCTGCGAACACTTTACAAGTCATTGGTCACACATGGATTCTTGAATCAATCGCTGCATGTAAATTGCAGCCTTTTGTTTACTAA 2028 0.4265 MDDSGSKTKLLNPWMLHFQKLALELKCPLCLSLFKRPVLLPCNHLFCNSCLADCITAGPGCAVCKATYAQTDVRHVPFVENVVAIYRSLDATFCASLFQPCSSGDGRVLEPCQAILNSTSSSLKAAKLPRNLTNSNEVGVGKNFKSKSVVHDKAEEFELSRERGKPNPMQSSHMELGGREECGVMEMDVNQVTQSAPDSPPFCDTKGSDNDFSDQGSEHPLLPGRLENSSLKRAGTGNGNLKERMGQLRSESSASETEGLARDLKRQKNLDFKPGKEPGAPLPKIDMCPTGRICSFCQSSKISEATGPMLHYANGNLVTGDAAMKPNVIPVHRICIDWAPQVYFVGEVVKNLKAEVARGAKLKCSKCNLKGAALGCYVKSCRRTYHVPCAMDISDCRWDHEDFLLLCPVHSNVKFPCEKIRSKKKATQKHPTFSHLPSHHSNRLEASQDASKKLVFCGSALSNEEKVFLINYASKVGATVTKFWTSNVTHVIAATDAHGACSRTLKVLMAILNGRWVLKMDWIKACMQEINPVEEEPYEINLDNQGCQGGPKAGRLRALANEPKLFSGLKFYFSGDYVSTYKEDLEELIEVGGGTVLRIKEELEAHRHECKGDSSKLLVVYNLDPPQGCKLGEEVSILWQRLNDAEDLAANTLQVIGHTWILESIAACKLQPFVY 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01579 675 Pfam PHD-like zinc-binding domain 332 410 - -
Gma19g01579 675 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 413 IPR013083 -
Gma19g01579 675 Pfam BRCT domain, a BRCA1 C-terminus domain 563 672 IPR001357 -
Gma19g01579 675 Pfam BRCA1 C Terminus (BRCT) domain 454 527 IPR001357 -
Gma19g01579 675 ProSiteProfiles Extended PHD (ePHD) domain profile. 291 411 IPR034732 -
Gma19g01579 675 Pfam Zinc finger, C3HC4 type (RING finger) 24 68 - -
Gma19g01579 675 ProSiteProfiles BRCT domain profile. 561 675 IPR001357 -
Gma19g01579 675 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 96 IPR013083 -
Gma19g01579 675 MobiDBLite consensus disorder prediction 256 273 - -
Gma19g01579 675 MobiDBLite consensus disorder prediction 193 282 - -
Gma19g01579 675 Gene3D BRCT domain 450 556 IPR036420 -
Gma19g01579 675 PANTHER BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 9 673 - -
Gma19g01579 675 SUPERFAMILY BRCT domain 454 541 IPR036420 -
Gma19g01579 675 SMART BRCT_7 448 530 IPR001357 -
Gma19g01579 675 SMART BRCT_7 563 668 IPR001357 -
Gma19g01579 675 Gene3D BRCT domain 563 668 IPR036420 -
Gma19g01579 675 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 9 673 IPR031099 GO:0006281|GO:0006974
Gma19g01579 675 MobiDBLite consensus disorder prediction 193 210 - -
Gma19g01579 675 ProSitePatterns Zinc finger RING-type signature. 42 51 IPR017907 -
Gma19g01579 675 ProSiteProfiles Zinc finger RING-type profile. 27 65 IPR001841 -
Gma19g01579 675 SUPERFAMILY RING/U-box 24 87 - -
Gma19g01579 675 SUPERFAMILY BRCT domain 565 673 IPR036420 -
Gma19g01579 675 SMART ring_2 364 410 IPR001841 -
Gma19g01579 675 SMART ring_2 27 64 IPR001841 -
Gma19g01579 675 CDD BRCT_Bard1_rpt1 454 529 - -
Gma19g01579 675 ProSiteProfiles BRCT domain profile. 454 540 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01579 Gma-Chr19 45200287 45206864 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01579 K10683 - gmx:100306420 1349.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01579 19 45200287 45206864 Gma19g01579 19 45200287 45206864 ECH
Gma19g01579 19 45200287 45206864 Gma03g01525 03 41490937 41496099 GST