Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01571 ATGGATCATGTTATTGGTGGGAAGTTTAAACTGGGAAGGAAAATCGGGAGTGGGTCTTTTGGGGAGCTTTATATAGCTGTTAATATACAAACTGGAGAGGAGGTGGCTGTCAAGCTGGAACCTGTGAAGACCAAGCATCCCCAGCTTCTCTATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACGGGGATTCCTCATCTCAAGTGGTTTGGAGTAGAGGGAGACTACAATGTCATGGCAATTGATCTTCTTGGACCAAGTCTGGAAGATTTGTTCAATTATTGTAACCGGAAGTTAACATTGAAGACAGTGTTAATGCTTGCTGATCAATTAATTAACAGAGTTGAATATATGCATTCTAGAGGTTTCCTTCACCGTGACATTAAGCCAGACAATTTTTTAATGGGCCTAGGACGTAAAGCAAACCAGGTGTACATCATTGACTATGGCCTTGCAAAAAAATATAGGGATCTTCAGACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCTCGGTATGCAAGTGTCAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATTTGGAATCTCTTGGTTATGTGCTCATGTACTTCTTAAGAGGAAGTCTTCCTTGGCAGGGACTAAAGGCTGGCACCAAAAAACAAAAATATGATAAAATCAGTGAGAAGAAAATGTCAACTTCAATAGAGGTGCTCTGCAAGTCATATCCCTCAGAATTTGTATCGTATTTTAACTACTGCCGAACGTTGCGGTTTGAAGACAAGCCTGATTATTCATATTTAAAGAGGCTTTTTCGAGATTTATTTATCCGAGAAGGCTATCAATTTGACTACGTTTTTGATTGGACTATATTGAAGTATCCGCAGATTGGTGGCAGCAGCTCTAGAGGACGGCATGAAAGTGGCAAGGCAGCTATGCATGCAGGACCATCTGTACAAAAGCCAGAAAAAGTATCAGTTGGGAAAGAGATTCGAGAAAAATTCTCTGGTGCTGTTGAAGCTTTCTCCCGGAGGAACCCAACAAGTCCTAGTCCTCGTGGTGATCACTCCAAACATAGGAGTTTTGAGGAAGTAGCGGTACACAAGGATGTGTACCGTGATCAAGAGAAAGGACGCAATTCATCTCGATATGGCAGCAGTTCAAGAAGACCCATAATCTCATCGTCAACTAGGCCAAGTTCCTCTGGTGATCATACTGACAGTCGTACTGGCCGGCTAACTTCAAGTGGAAATCGATCATCTGCCTCACATAGAAATATTCAACCTATGTATGAGACAAAACAACCAACTTACATGCGCTCTGGATCCACCAGAGGCAACCGCGATGATCCTCTGCGGAGTTTTGAGCTCCTCTCCATCAGGAAGTAA 1392 0.4253 MDHVIGGKFKLGRKIGSGSFGELYIAVNIQTGEEVAVKLEPVKTKHPQLLYESKLYMLLQGGTGIPHLKWFGVEGDYNVMAIDLLGPSLEDLFNYCNRKLTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMSTSIEVLCKSYPSEFVSYFNYCRTLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGGSSSRGRHESGKAAMHAGPSVQKPEKVSVGKEIREKFSGAVEAFSRRNPTSPSPRGDHSKHRSFEEVAVHKDVYRDQEKGRNSSRYGSSSRRPIISSSTRPSSSGDHTDSRTGRLTSSGNRSSASHRNIQPMYETKQPTYMRSGSTRGNRDDPLRSFELLSIRK 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01571 463 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 452 - -
Gma19g01571 463 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Gma19g01571 463 MobiDBLite consensus disorder prediction 352 381 - -
Gma19g01571 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Gma19g01571 463 MobiDBLite consensus disorder prediction 301 463 - -
Gma19g01571 463 Gene3D Transferase(Phosphotransferase) domain 1 1 337 - -
Gma19g01571 463 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Gma19g01571 463 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma19g01571 463 MobiDBLite consensus disorder prediction 447 463 - -
Gma19g01571 463 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma19g01571 463 MobiDBLite consensus disorder prediction 382 445 - -
Gma19g01571 463 MobiDBLite consensus disorder prediction 326 340 - -
Gma19g01571 463 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma19g01571 463 PANTHER CASEIN KINASE-RELATED 1 452 - -
Gma19g01571 463 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01571 Gma-Chr19 45118564 45124110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01571 2 213 Miscellaneous Gene Families AT1G29230 27.232 3.03e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gma19g01571 Pkinase 1.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01571 K08960 - gmx:100807882 896.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01571 19 45118564 45124110 Gma19g01571 19 45118564 45124110 ECH
Gma19g01571 19 45118564 45124110 Gma03g01515 03 41416436 41422152 GST
Gma19g01571 19 45118564 45124110 Gma10g00360 10 3460882 3470424 PCT
Gma19g01571 19 45118564 45124110 Gma13g01058 13 24745235 24752469 PCT
Gma10g00360 10 3460882 3470424 Gma19g01571 19 45118564 45124110 PCT
Gma13g01058 13 24745235 24752469 Gma19g01571 19 45118564 45124110 PCT