Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01566 ATGGAAGCAGATTATGGAAAGGATTGCACCAAATCTGAGAATAGAGAAAATCTTTCAGTTCCCCCTGGTTTTACGTCCCTGACATCTTTCATTTTGAAAAGGGATGGAAATGTTAAGAAAAGTGATAAATCTACAGCCTTTCAAATTGCATCCGAACAAGAGCCAATATTCATGGAGACTATTCCTGAGATGAATGACATTAGTGCTTATAGACAGGTTCTTATGCATCGGCCGTGGATAATCGCAGACCAGAGCAATCACCACAAACTTGAGGAATCTCACATAAAGCATCTTCCTATGGATCCCCCTTTAAATGATGGTCGTCCAAAAGGGATCATACATGGATGTCCAAACTGCAGTAATTGTGTGAAGGTAACAGCAAGGTGGCATCCTGAGGATGCTATAAGAGAAGTTTTGGAAGAAGCTCCTACTTTCCACCCAACAGAAGAGGAATTCAAAGACACACTTAAATATATTGCAAGCATACGTTCCAGAGCAGAACCTTATGGAATGTGCCGTATTGTCCCTCCTACTTGCTGGAAACCACCATGCTCTCTTGAGAAAAAGAACATATGGGAAAAGTCTGAATTTGTTGCTCAGATTCAGCGAATTGATGGACACCAACTTCAGCATGCACAAGAAATTATGGCTAGTGCTAGTGGAAATACAAAAACCAAGAGAAAAAGAGATGTAAAAGTAGCTTTAGACTCTCAGCTTGGTAATAGAAACACCAGCACTCCAAATAACCAGAATGTTCAAAAATGTGACTGTGAGTCTGAACCTGGTCCTAAATTCAGTCTCAAAACATTAAAGAAATATGCAGACATATTTAAGAGTCAGTACTTTGATTACAAGGATAAGAAGAAGATTATAGGTTCCAATATAAAATTAGCTATACATCAGCAGTGGGAACCATCTGTGGAGAATATTGAAGGTGAATATGGACGGATTGTTCAAAATCCAACTGAAGAAATCAAGGTGCTTTGTGTTAACACTTTGGAGGCCGGAGTTTTTAGCAGTGGATTTCCGACAGTTTCTGATCCTGTGGAGGCATACACTTACCCTGAATATTTGAAATCTGGATGGAACTTGAATAATATACTTTCACTCTCAGGATCCCTTCTTTGTTTTGAAAGCTCTGAAGCTTCACGTAATTTTGCCCCCAAGATTCACATGGGAATGTGCTTCTCTCCACTCAACTGGAAAGTTGAAGAGCACCACTTATACTCATTATATTACGTGCATTTGGGTGAACCAAAAGTGTGGTATGGCATCCCAGGAAAATTTGCTATTAACTTTGAAACAATTTGGAAGAAGTATCTCCCTGATTTGCAAGCAGGACAGCCTGATATGCATGATAATATGGTGATGCAGCTATCATGCTCCATATTGAAGGCAGAGGGCATTCCTGTATATCGTTGTATTCAGTATCCTCGTGAGTTTGTTCTTGTCTTTCCCGGGTCATATCATTCAGGATTTGATTGTGGCTTCAACTGTTCTGAAGCAGTAAGTTTTGCTCCTCTTGAGTGGCTGCTTCAGGGACAGAATGTTGTAGAGCTATACTGTGAACAGAGGAGAAAGACATTACTTTCATATGATAAGCTTTTGCTAGGAGCAGCAAGGGAAGCTGTGAGGGTCCAATGGGAAACTAATCTGTGCAGGAAGAGCACATCAGATAGCTTAACATATAAAGATGCCTATAAAAAAAATGGGTTCTTAATAAAAGCTTTGAACTCTCGCATCCAGAGTGAAAGTTTGAAGAGAAAATTTCTTTGCACTTCTTTGGTATCACAAAGAATGGATGAAAATTTTGATGCCACTTGTAAAAGGGAATGTAGTATTTGCCTCCGTGATTTACACTTGTCTGCTGTAGGTTGTTCATGTTCAGATAACTTTGCATGTCTTGATCATGCAAAACAGCTTTGTTCTTGCACTTGGAGCAACAAAACTCTCTTCTACCGTTATGAAATCAATAATTTGAATGTTCTTTGTCAAGCTTTGGATGGGAAATTAAGTGCAGTCTTTAAATGGGCTAAAGAGGATCTCGGATTAACTCTGAACTCTGTTGCCTCCAAGAGATCAAAACAAAGCTCAAAAAACATAATTGGTTCAACCCACCCTTCGCAAGATTTGCAGATGAATGAACCTGTATCGCAGACAGCATCAGATGAATCCTCAAAAGGGAAACAACGTCAATTGCTAGATATATTgaattcatcaaaaacaaaagaaaatgaagtggttccgaattcatcaaagaaacaaaatgCAGTCGTTTCCCAAGTTGTGCGGACTTTTGGTGGCACTCACAGTAGTTCTTATGACATTCGTTCAAAAATGAAGACAACTGTACTTCAGTCAACCTTTGCAGATGATAAGAAAGGAATCAATTCTGTTGGTGCCAAAATTGATACGAAGACACTTGGGCATAAGTTTACAATTTCAAAGGAAGTAGGAGATCCAAAAGTATCTAAAGTTCCTTCAGTTACAAACGCACGTTACTTGCCTTTTCTACAAGACAATGTGTTAGCTGATGTTTCATCTGATAGTTCGAGCACATCTATGTCGTCAGATTCTGAAGATGAAGATGTGCAAGTAGCTAATGGCTAA 2610 0.3847 MEADYGKDCTKSENRENLSVPPGFTSLTSFILKRDGNVKKSDKSTAFQIASEQEPIFMETIPEMNDISAYRQVLMHRPWIIADQSNHHKLEESHIKHLPMDPPLNDGRPKGIIHGCPNCSNCVKVTARWHPEDAIREVLEEAPTFHPTEEEFKDTLKYIASIRSRAEPYGMCRIVPPTCWKPPCSLEKKNIWEKSEFVAQIQRIDGHQLQHAQEIMASASGNTKTKRKRDVKVALDSQLGNRNTSTPNNQNVQKCDCESEPGPKFSLKTLKKYADIFKSQYFDYKDKKKIIGSNIKLAIHQQWEPSVENIEGEYGRIVQNPTEEIKVLCVNTLEAGVFSSGFPTVSDPVEAYTYPEYLKSGWNLNNILSLSGSLLCFESSEASRNFAPKIHMGMCFSPLNWKVEEHHLYSLYYVHLGEPKVWYGIPGKFAINFETIWKKYLPDLQAGQPDMHDNMVMQLSCSILKAEGIPVYRCIQYPREFVLVFPGSYHSGFDCGFNCSEAVSFAPLEWLLQGQNVVELYCEQRRKTLLSYDKLLLGAAREAVRVQWETNLCRKSTSDSLTYKDAYKKNGFLIKALNSRIQSESLKRKFLCTSLVSQRMDENFDATCKRECSICLRDLHLSAVGCSCSDNFACLDHAKQLCSCTWSNKTLFYRYEINNLNVLCQALDGKLSAVFKWAKEDLGLTLNSVASKRSKQSSKNIIGSTHPSQDLQMNEPVSQTASDESSKGKQRQLLDILNSSKTKENEVVPNSSKKQNAVVSQVVRTFGGTHSSSYDIRSKMKTTVLQSTFADDKKGINSVGAKIDTKTLGHKFTISKEVGDPKVSKVPSVTNARYLPFLQDNVLADVSSDSSSTSMSSDSEDEDVQVANG 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01566 869 Pfam jmjN domain 143 176 IPR003349 -
Gma19g01566 869 MobiDBLite consensus disorder prediction 218 257 - -
Gma19g01566 869 SMART cupin_9 356 522 IPR003347 -
Gma19g01566 869 ProSiteProfiles JmjN domain profile. 142 183 IPR003349 -
Gma19g01566 869 SUPERFAMILY Clavaminate synthase-like 353 549 - -
Gma19g01566 869 Gene3D Cupin 127 506 - -
Gma19g01566 869 MobiDBLite consensus disorder prediction 846 869 - -
Gma19g01566 869 ProSiteProfiles JmjC domain profile. 356 522 IPR003347 -
Gma19g01566 869 SMART JmjN_1 141 182 IPR003349 -
Gma19g01566 869 Pfam C5HC2 zinc finger 612 661 IPR004198 -
Gma19g01566 869 PANTHER INACTIVE LYSINE-SPECIFIC DEMETHYLASE JMJ19-RELATED 81 765 - -
Gma19g01566 869 Pfam JmjC domain, hydroxylase 391 505 IPR003347 -
Gma19g01566 869 MobiDBLite consensus disorder prediction 697 732 - -
Gma19g01566 869 MobiDBLite consensus disorder prediction 237 256 - -
Gma19g01566 869 PANTHER LYSINE-SPECIFIC DEMETHYLASE 81 765 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01566 Gma-Chr19 45029436 45035331 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01566 1 691 JUMONJI Transcription Factor Family AT1G08620 45.775 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gma19g01566 JmjC 2.2e-31 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01566 - - gmx:100804864 1743.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01566 19 45029436 45035331 Gma19g01566 19 45029436 45035331 ECH