Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01563 ATGGTTATGGCATGTGAAGAATTCTGTCTGATACTTGAATTAGTGTCATTTGAGTTGACGAGTCAAATAAATACATCTTCAGTGAAATGTCTTGTCAACAGCATTTCTCGATTCATGCATCTAGTTTGTTGTCAAGCAGTGAAACCTATGCCCCTTCAGAAGAACTGTAATAATATGGTTGGTGTGTTAAAGCGGTTGAAACCAGTGCTCGATGATATTGTGGATTTCAAAATCCCTTTGGATGAAAATTTGCATAGAGAATGTGAAGAATTGGATATGCAGGTTAATGAAGCTAGGGAGTTCATTGAAAAATTGGGCCCAAAGATGAGCAGGATTCACAGTGTTCTTCAAAGTGGGGAATTGTTGATCAAGTTACAGAACTCTTCATATAAGATTTGTCACATGATAGTTAAATCCCTAAAGGCACCTGCATCTGTTTTGGTTTTGGGTAATCTTCAGCAATATATGCAGGAACTTCAGTGTCTTAAGAAGGAACCTGCAATGGTCTATATAGAAGAAGCACTGAGAAATCAAAGGGACAATATTGAACCTTGCTATGATTCTCTAAAGGAAATTATAGGGTTACTCAAATTGACGTCAAACCAGGAGCTCCTGAAAGAAAGTATTGCTGTGGAAAAGGAAAGGTCAAATGCTGAAGTCAATAAAACAAAAGGGAACCTGGATGAAATTAACCAAATTGTGAATCTTGTGTGCAATTTGCGTGATTATGTGATGAAATTTGAGTGCCCTGAAGTCAAAAGTGGTGTTTCAATTCCCCCATATTTTCGATGTCCTTTATCATTAGAACTCATGTCAGATCCTGTTATTGTGGCTTCAGGTCAAACATATGAAAGGCAATCCATTCAAAAGTGGCTTGATCATGGGCTAACTGTTTGTCCCAACACTCATCACAGACTTGTCCATACAAATCTCATTCCCAATTATACTGTTAAAGCTATGATAGCAAATTGGTGTGAGGAAAATAATGTCAAACTTCCCTGTAACTCTAAGCAAAGTAATTCAACTCGTATTTCATCCCCCTCAGATCATTTATTACATCAAGATTTAGATCGTCAGTGTAGCTTTCAGTCTTCAGATAGTAGCAATTCCTATTCAAATCAAACTGCAAATGCATTTGAGAAGCAAAAGGATGATAACTCTTTTGGATCAGGCAGGGGATCCCATAGAAGCCGGAATGGACAGACAGAAAAGTTTGAGCAACAATCCCCTGCACCTTCATGTAGTAACCGCAGAAGTGAATCATTTTCAAGTTCTATTTCTAGTACTGATTATGTACTTCCTGTTTCAAAAGAGGTGTCAGTCATATCCAATAAGCATCACAATGTGGAGTTGTCTGGAGAGATTACTAATGGGTGTCCTGCTTCTCCTGCATATAAAGAATCAGTGATTTATCCTTGGTTATCTGGAAAGCAATTTCATAGCCCTGGATCAAAAATTGGAAGGATGGAGGATGAAAATAAGTATGAGAGTAACAATAATATTATTACTAGTCATTCAAAAGTTGCTTCCCATCCTGTTTCCAACTTAGGATCTGATGAATTGATCACCACATCCCATGTCCATGAGTTGATTGAAGATCTCCAGAGTCAATCGAATGAAACACGAACTGCTGCTGCAGAACAATTGAGGTTCTGTACCAAGCATAACATGGAGAACCGCATCATTGTAGGGCAGTGTGGGGCTATTATGCCTTTACTTTCACTGCTATATTCAGACATGAAGATAACACAAGAGCATGCTGTGACAGCTCTACTGAATTTGTCAATCAATGAAGGAAACAAGGCCTTGATTATGGAAGCAGGGGCCATAGAACCACTTATCCATCTTTTGGAGAAAGGGAATGATGGTGCAAAGGAGAATTCTGCTGCTGCTCTGTTCAGCCTCTCTGTAATAGATAACAATAAGGCAAAAATTGGCCGTTCTGGTGCTGTTAAAGCTTTGGTGGGTCTTCTAGCCTCAGGAACTCTTAGGGGAAAGAAGGATGCTGCCACTGCTTTATTCAACCTATCAATATTCCATGAGAATAAAGCTCGTATAGTTCAAGCTGGAGCCGTGAAGTTTCTGGTTCTGCTATTGGATCCTACTGATAAAATGGTTGACAAGGCTGTTGCTCTTTTGGCAAACCTGTCAACAATTGCAGAGGGCCGAATAGAAATTGCAAGGGAAGGGGGCATTCCCTCACTTGTTGAAATTGTTGAATCAGGTTCTCAGAGGGGAAAGGAAAATGCTGCTTCCATCCTCTTGCAAATGTGTCTTCATAGTCAAAAGTTTTGTACCCTGGTTCTCCAAGAAGGAGCTGTACCTCCCCTAGTTGCATTATCTCAGTCCGGTACTCCAAGAGCTAAGGAAAAGGCACAACAGCTTCTGAGTCATTTTCGTAATCAGCGTGAAGGAGCCACGGGGAAGGGGAAATCATGA 2439 0.4002 MVMACEEFCLILELVSFELTSQINTSSVKCLVNSISRFMHLVCCQAVKPMPLQKNCNNMVGVLKRLKPVLDDIVDFKIPLDENLHRECEELDMQVNEAREFIEKLGPKMSRIHSVLQSGELLIKLQNSSYKICHMIVKSLKAPASVLVLGNLQQYMQELQCLKKEPAMVYIEEALRNQRDNIEPCYDSLKEIIGLLKLTSNQELLKESIAVEKERSNAEVNKTKGNLDEINQIVNLVCNLRDYVMKFECPEVKSGVSIPPYFRCPLSLELMSDPVIVASGQTYERQSIQKWLDHGLTVCPNTHHRLVHTNLIPNYTVKAMIANWCEENNVKLPCNSKQSNSTRISSPSDHLLHQDLDRQCSFQSSDSSNSYSNQTANAFEKQKDDNSFGSGRGSHRSRNGQTEKFEQQSPAPSCSNRRSESFSSSISSTDYVLPVSKEVSVISNKHHNVELSGEITNGCPASPAYKESVIYPWLSGKQFHSPGSKIGRMEDENKYESNNNIITSHSKVASHPVSNLGSDELITTSHVHELIEDLQSQSNETRTAAAEQLRFCTKHNMENRIIVGQCGAIMPLLSLLYSDMKITQEHAVTALLNLSINEGNKALIMEAGAIEPLIHLLEKGNDGAKENSAAALFSLSVIDNNKAKIGRSGAVKALVGLLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVLLLDPTDKMVDKAVALLANLSTIAEGRIEIAREGGIPSLVEIVESGSQRGKENAASILLQMCLHSQKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGATGKGKS 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01563 812 MobiDBLite consensus disorder prediction 380 422 - -
Gma19g01563 812 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 28 807 - -
Gma19g01563 812 Pfam U-box domain 258 329 IPR003613 GO:0004842|GO:0016567
Gma19g01563 812 SUPERFAMILY RING/U-box 256 331 - -
Gma19g01563 812 MobiDBLite consensus disorder prediction 403 422 - -
Gma19g01563 812 Pfam Armadillo/beta-catenin-like repeat 558 595 IPR000225 GO:0005515
Gma19g01563 812 Pfam Armadillo/beta-catenin-like repeat 597 636 IPR000225 GO:0005515
Gma19g01563 812 Pfam Armadillo/beta-catenin-like repeat 640 677 IPR000225 GO:0005515
Gma19g01563 812 CDD RING-Ubox_PUB 262 303 IPR045210 -
Gma19g01563 812 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 649 691 IPR000225 GO:0005515
Gma19g01563 812 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Gma19g01563 812 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 567 609 IPR000225 GO:0005515
Gma19g01563 812 Gene3D - 491 806 IPR011989 -
Gma19g01563 812 PANTHER U BOX DOMAIN-CONTAINING 28 807 - -
Gma19g01563 812 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 690 731 IPR000225 GO:0005515
Gma19g01563 812 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Gma19g01563 812 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 257 332 IPR013083 -
Gma19g01563 812 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 608 650 IPR000225 GO:0005515
Gma19g01563 812 Coils Coil 201 221 - -
Gma19g01563 812 SMART arm_5 638 678 IPR000225 GO:0005515
Gma19g01563 812 SMART arm_5 556 596 IPR000225 GO:0005515
Gma19g01563 812 SMART arm_5 719 759 IPR000225 GO:0005515
Gma19g01563 812 SMART arm_5 679 718 IPR000225 GO:0005515
Gma19g01563 812 SMART arm_5 597 637 IPR000225 GO:0005515
Gma19g01563 812 SUPERFAMILY ARM repeat 520 799 IPR016024 -
Gma19g01563 812 MobiDBLite consensus disorder prediction 385 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01563 Gma-Chr19 44982551 44986676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01563 28 812 U-box Gene Family AT3G54790 51.447 0.0 693
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01563 - - gmx:100804684 1512.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01563 19 44982551 44986676 Gma19g01563 19 44982551 44986676 ECH