Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01555 ATGGGGAGAGCTCCATGCTGTGAGAAAATGGGGTTGAAGAGAGGGCCATGGACTCCAGAAGAAGATCAAATTCTCATCAATTACATCAACACTTATGGCCATGCTAATTGGCGTGCACTGCCCAAACTAGCTGGGCTATTAAGGTGTGGAAAGAGTTGTAGACTCCGGTGGATAAATTATCTGAGACCGGACATCAAACGGGGCAACTTTACCAGAGAAGAAGAGGACACTATAATCAGTTTGCATGAAATGTTGGGAAACAGATGGTCGGCTATTGCGGCAAGGTTGTCAGGGAGAACAGACAACGAGATAAAAAACGTGTGGCACACCCACTTGAAGAAGAGGCTGCCACAAAATTACCAACAAAGCCATCACACTAAAAAACGAAGCAAAAAACAACCACCAAAGTTGGATGCGGACGCCTCCAAATCCAACCAAGACGCCAAACTAGAACAACAAGACCCCGTTAATATTCATGGATCGAACTCTGAGGACATGATGATGCCACTATCTCCTCCTCATTGTTCTAGCGACATGTCCTCCTCCCTCACCACCAGTGACAACAATAGTAACGTTAATATTATTAATAATAATCATGATATGTCCTTAAATGTTAATGATTATGATATTGACACCCCAGAGAATAATCTTGCATTGGACGAGGATTTCTGGTCGGAAGTTTTGTCATCTGATAATTCCGGCGTGACAAGCGGATTTCCGACCCTTGACTATGATCAGTTTCAACCAATGTCTCCTCTAGTGACAGAAGAAGGGGTCCTTATAGATTGTTCGTCGAGTACGTGCGACGATGGCATGGATTTTTGGTGCAATGTTTACTCGAGAGCTGAGGAATTTACCCAGTTACTGGAATTGTGA 876 0.4384 MGRAPCCEKMGLKRGPWTPEEDQILINYINTYGHANWRALPKLAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIISLHEMLGNRWSAIAARLSGRTDNEIKNVWHTHLKKRLPQNYQQSHHTKKRSKKQPPKLDADASKSNQDAKLEQQDPVNIHGSNSEDMMMPLSPPHCSSDMSSSLTTSDNNSNVNIINNNHDMSLNVNDYDIDTPENNLALDEDFWSEVLSSDNSGVTSGFPTLDYDQFQPMSPLVTEEGVLIDCSSSTCDDGMDFWCNVYSRAEEFTQLLEL 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01555 291 MobiDBLite consensus disorder prediction 133 147 - -
Gma19g01555 291 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma19g01555 291 CDD SANT 69 112 IPR001005 -
Gma19g01555 291 Gene3D - 69 145 - -
Gma19g01555 291 PANTHER MYB-RELATED TRANSCRIPTION FACTOR LBM1 1 285 - -
Gma19g01555 291 CDD SANT 16 61 IPR001005 -
Gma19g01555 291 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 285 - -
Gma19g01555 291 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Gma19g01555 291 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gma19g01555 291 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma19g01555 291 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma19g01555 291 Gene3D - 11 67 - -
Gma19g01555 291 SMART sant 66 114 IPR001005 -
Gma19g01555 291 SMART sant 13 63 IPR001005 -
Gma19g01555 291 MobiDBLite consensus disorder prediction 118 132 - -
Gma19g01555 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma19g01555 291 MobiDBLite consensus disorder prediction 112 169 - -
Gma19g01555 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01555 Gma-Chr19 44934829 44937065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01555 1 291 MYB Transcription Factor Family AT2G31180 49.835 3.96e-84 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma19g01555 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01555 K09422 - gmx:100802214 575.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01555 19 44934829 44937065 Gma19g01555 19 44934829 44937065 ECH
Gma19g01555 19 44934829 44937065 Gma03g01500 03 41249472 41251551 GST
Gma19g01555 19 44934829 44937065 Gma10g00065 10 654527 656691 PCT
Gma19g01555 19 44934829 44937065 Gma02g00052 02 619350 621446 PCT
Gma10g00345 10 3274349 3277400 Gma19g01555 19 44934829 44937065 PCT