Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01550 ATGGATTTAGACTTCGATTCCACTTTTTTCTTGAACCAAAACCTTAGCTTCTTCTCAGAAAACTCCTCTGTTTGTGGAGACCCTTTTTCTTGGGACAACAACTTTGTCTTGGATGATATCTTCAACTTGAGCGACAATTCGTCACAATCACAAACCAAGGAAACATCCTCGGCGTCCAATGTTTCCAGTTCTATTGGTAGCGTCGAGTTACAAGAAGTCTCATCCAACACGACTTATGAAGAAGTGAAAGAAGGACAatcagtatcattatcattgtcgtcatcatcatcgttgtcactaccgttgtcactaccgttgCTGCCTTCGCAACAAGCGAAGGAACAAAGGATGTACAGAGGAGTGAGGAAGAGGCCGTGGGGGAAATTCGCGGCCGAGATAAGGGATTCCACTCGAAACGGCGTTCGAGTGTGGATTGGAACCTTTGACACAGCCGAAGCCGCAGCTCTGGCTTACGACCAAGCCGCGTTCTCCACGAGAGGGTCTCTCGCGGTGTTGAATTTCCCAGAGGAAGTGGTGAGTGAGTCCCTCAAAGACATGCCAAGTAAGCCATGGGAAGAAGGTTCCTCCCCTGTTTTGGCTCTTAAGAGAAAACACACTATGAGGAGAAAGTCCAATTCTAAGAAGAAGAGCAAGATTGATCAGAGGGAACAATTAGATTTCAGCAGCAGTTCGCAAAATGTGCTGGTGTTCGAGGATTTGGGTGCTGAGTACCTAGAACAGCTCTTGAGTTTGACTTCTTAG 762 0.4304 MDLDFDSTFFLNQNLSFFSENSSVCGDPFSWDNNFVLDDIFNLSDNSSQSQTKETSSASNVSSSIGSVELQEVSSNTTYEEVKEGQSVSLSLSSSSSLSLPLSLPLLPSQQAKEQRMYRGVRKRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFSTRGSLAVLNFPEEVVSESLKDMPSKPWEEGSSPVLALKRKHTMRRKSNSKKKSKIDQREQLDFSSSSQNVLVFEDLGAEYLEQLLSLTS 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01550 253 CDD AP2 118 176 IPR001471 GO:0003700|GO:0006355
Gma19g01550 253 PANTHER DNA-BINDING DOMAIN 13 250 IPR044808 GO:0003700|GO:0009873
Gma19g01550 253 ProSiteProfiles AP2/ERF domain profile. 117 175 IPR001471 GO:0003700|GO:0006355
Gma19g01550 253 SUPERFAMILY DNA-binding domain 117 176 IPR016177 GO:0003677
Gma19g01550 253 SMART rav1_2 117 181 IPR001471 GO:0003700|GO:0006355
Gma19g01550 253 Pfam AP2 domain 118 167 IPR001471 GO:0003700|GO:0006355
Gma19g01550 253 MobiDBLite consensus disorder prediction 204 229 - -
Gma19g01550 253 PRINTS Ethylene responsive element binding protein signature 118 129 IPR001471 GO:0003700|GO:0006355
Gma19g01550 253 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Gma19g01550 253 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 250 - -
Gma19g01550 253 Gene3D AP2/ERF domain 117 177 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01550 Gma-Chr19 44885044 44886127 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01550 114 249 AP2-EREBP Transcription Factor Family AT2G31230 56.962 2.62e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma19g01550 AP2 4.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01550 K14516 - gmx:100801682 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01550 19 44885044 44886127 Gma19g01550 19 44885044 44886127 ECH
Gma19g01550 19 44885044 44886127 Gma03g01496 03 41202352 41203352 GST
Gma19g01550 19 44885044 44886127 Gma10g00343 10 3245677 3246823 PCT
Gma19g01550 19 44885044 44886127 Gma13g01030 13 24466262 24467298 PCT
Gma10g00343 10 3245677 3246823 Gma19g01550 19 44885044 44886127 PCT
Gma13g01030 13 24466262 24467298 Gma19g01550 19 44885044 44886127 PCT