Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01549 ATGGAGGGAGGGAGAGGAGTTGTGAATGGAAACCCTTCAAACGCAGAGGTTCGGTACAGAGGTATTCGTAGGaggccatgggggaagtttgcagcagagattcgtgaccccacgataaaaggcactcgaatatggcttggaacctttgacactgctgaacaagcagcacgtgcttatgatactgctgcttTTCATTTTAGGGGTCACAAGGCCATACTCAATTTCCCAAATGAGTATGGTCACGTGACTCCTGATCAAAATTCTTCCACTTCATTGCCTCTTCCTTTGTCCTCTTCTTCTTCTTCCCCTTACTACCCTCAACAACAACAACAAGGAAATGATGATGACACTTTTGAATTGGAATGCTTGGACAATAAGTTTTTGGAAGAACTCCTTCAGCAGGCGCCTGATCGTTCAGGCAACCGATCAAATTAA 435 0.3195 MEGGRGVVNGNPSNAEVRYRGIRRRPWGKFAAEIRDPTIKGTRIWLGTFDTAEQAARAYDTAAFHFRGHKAILNFPNEYGHVTPDQNSSTSLPLPLSSSSSSPYYPQQQQQGNDDDTFELECLDNKFLEELLQQAPDRSGNRSN 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01549 144 MobiDBLite consensus disorder prediction 77 117 - -
Gma19g01549 144 PANTHER DNA-BINDING DOMAIN 18 131 IPR044808 GO:0003700|GO:0009873
Gma19g01549 144 Pfam AP2 domain 18 69 IPR001471 GO:0003700|GO:0006355
Gma19g01549 144 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Gma19g01549 144 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Gma19g01549 144 MobiDBLite consensus disorder prediction 80 116 - -
Gma19g01549 144 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Gma19g01549 144 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Gma19g01549 144 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 18 131 - -
Gma19g01549 144 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Gma19g01549 144 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Gma19g01549 144 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01549 Gma-Chr19 44873051 44873685 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01549 14 132 AP2-EREBP Transcription Factor Family AT3G23230 57.143 2.65e-37 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma19g01549 AP2 8.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01549 - - gmx:100778998 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01549 19 44873051 44873685 Gma19g01549 19 44873051 44873685 ECH
Gma19g01549 19 44873051 44873685 Gma03g01495 03 41190069 41190846 GST
Gma19g01549 19 44873051 44873685 Gma10g00342 10 3235842 3236318 PCT
Gma19g01549 19 44873051 44873685 Gma13g01029 13 24453129 24453703 PCT
Gma10g00342 10 3235842 3236318 Gma19g01549 19 44873051 44873685 PCT
Gma13g01029 13 24453129 24453703 Gma19g01549 19 44873051 44873685 PCT