Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01546 ATGGCACTGAACCACAACCCCTCTGGCAAGCTTGTGTATCAAGCTCCTCATGCTAACACAATAATCCATCACACACCACAACCTGCTTCAGATTTACCCATTATTGCCATCATTGTGCCCAGCATCTTTGTCACTGCTTTCATACTCATCACCTACTTAACCCTTGTGAACAAATGCTGCTCAAACTGGCACCAACTTAACCCTTTGAGATGGATTTCAACACTACGAGCCCCACAGAATGAAGATCAAGATCCCTTCATAGCACTCTCTCTTTCTCCTAGGATGCGGAACCATGGACTTGATGAATCTGCCATCAAAGAAATCCCAACACTTGAATACAAAAAAGAAGAAGCTGAGAAGAATATTCAAAGTGTATGTAGCTGTGTGGTTTGTTTGACTGAGTTTCAAGAACATGATATGCTAAAAGCGCTTCCCATTTGCAAACACGCCTTTCACTTGCATTGCATTGATATTTGGCTTCAAACAAATGCCAATTGCCCTCTTTGTAGATCAAGCATTATTTCAGGCAAAAAACATTGTCCAATGGATCATGTCATAGCTCCAAGCTCTTCTCCTCAGGATTCTCAATTGCTCTCTTACATGGGAAGTGATGAGGATTTTGTGGTCATTGAACTTGGGGGAGAAAATGTGGCAACACTGCCTCAGATGATGCAACAAGAAAGAAGTGACACAAGGGAAATTAGAATAGTAGAGTATAGTAGAAGTCACTCTACAAGGAAGTGTCACCGTGTTTCTATCATGGGAGATGAGTGCATTGATGCTAGGAAGAAAGATGGGCAGTTTTCTATTCAGCCTATTCGAAGAGCTTTCTCAATGGATTAA 843 0.4164 MALNHNPSGKLVYQAPHANTIIHHTPQPASDLPIIAIIVPSIFVTAFILITYLTLVNKCCSNWHQLNPLRWISTLRAPQNEDQDPFIALSLSPRMRNHGLDESAIKEIPTLEYKKEEAEKNIQSVCSCVVCLTEFQEHDMLKALPICKHAFHLHCIDIWLQTNANCPLCRSSIISGKKHCPMDHVIAPSSSPQDSQLLSYMGSDEDFVVIELGGENVATLPQMMQQERSDTREIRIVEYSRSHSTRKCHRVSIMGDECIDARKKDGQFSIQPIRRAFSMD 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01546 280 Pfam Ring finger domain 127 170 IPR001841 -
Gma19g01546 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 182 IPR013083 -
Gma19g01546 280 SUPERFAMILY RING/U-box 104 182 - -
Gma19g01546 280 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Gma19g01546 280 SMART ring_2 128 169 IPR001841 -
Gma19g01546 280 PANTHER RING-H2 FINGER PROTEIN ATL16 13 280 IPR044600 GO:0016567|GO:0016740
Gma19g01546 280 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 13 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01546 Gma-Chr19 44830986 44832136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01546 21 280 C3H Transcription Factor Family AT1G04360 41.892 1.75e-64 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01546 K19041 - gmx:100802567 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01546 19 44830986 44832136 Gma19g01546 19 44830986 44832136 ECH
Gma19g01546 19 44830986 44832136 Gma03g01492 03 41163981 41165015 GST
Gma19g01546 19 44830986 44832136 Gma10g00071 10 725692 726612 PCT
Gma19g01546 19 44830986 44832136 Gma20g00880 20 35101014 35102355 PCT
Gma10g00338 10 3181834 3182850 Gma19g01546 19 44830986 44832136 PCT
Gma13g01023 13 24351793 24352806 Gma19g01546 19 44830986 44832136 PCT