Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01540 ATGACTGGTTCTGGTTCTCCTTGTGGAGCCTGCAAGTTCTTGAGAAGGAAATGTGTGAGAGGTTGTGTTTTTGCACCTTACTTTTGTCATGAACAGGGTTCCACTCATTTTGCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTCTCAAAGCACCTTGCTCACCTCCCTGTGAGTGACCGTTGTGAAGCTGCAGTCACAATCTCTTATGAAGCTCAAGCTAGACTTCAGGATCCAATTTATGGCTGTGTTGCTCATATTTTTGCACTCCAACAACAGGTGGTGAGTTTACAAGCACAGCTAGTTTATCTCAGGGAACAAGCAAGTCAGATCTATCTCAATGGCTCTGCCACTGAAAACCCTAATGAGAAATACCTTGGAAAACCTACTACTTTCCCTCAAGATCTACAAAGTTGGTTCCAGATGGAAAATTCCAACTTGGCTTCACAATTTCTCCCTAACTTGTCCACCAATCCTTCAACACAGTATTATGGGAATACTAATACTCTCGTGGAACCAAACCCTATTGGAAATTATGAAAATTCAGGAACCGTAGAAGAAAGTATCTCATTTTCTAGCTTTAAAGAGAGTTGTAACTCTATGTCCTATGACATGCAAAGGCAGTGA 627 0.4179 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGSTHFAAIHKVFGASNVSKHLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVAHIFALQQQVVSLQAQLVYLREQASQIYLNGSATENPNEKYLGKPTTFPQDLQSWFQMENSNLASQFLPNLSTNPSTQYYGNTNTLVEPNPIGNYENSGTVEESISFSSFKESCNSMSYDMQRQ 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01540 208 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 1 206 - -
Gma19g01540 208 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Gma19g01540 208 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 206 - -
Gma19g01540 208 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01540 Gma-Chr19 44759704 44760789 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01540 7 133 AS2 family AT3G58190 74.419 3.05e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gma19g01540 LOB 3.5e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01540 K13945 - gmx:100527324 408.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01540 19 44759704 44760789 Gma19g01540 19 44759704 44760789 ECH
Gma19g01540 19 44759704 44760789 Gma03g01487 03 41107244 41107999 GST
Gma19g01540 19 44759704 44760789 Gma10g00329 10 3097732 3098857 PCT
Gma19g01540 19 44759704 44760789 Gma13g01013 13 24256108 24257454 PCT
Gma10g00329 10 3097732 3098857 Gma19g01540 19 44759704 44760789 PCT
Gma13g01013 13 24256108 24257454 Gma19g01540 19 44759704 44760789 PCT