Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01539 ATGGCTTCTGCTAGTGGAAATGGTGGCTCTAATGGCACTGGCTCTCCTTGCGGGGCATGCAAGTTCCTCAGAAGAAAGTGTGCTGCTGATTGCATCTTTGCACCTTACTTTTGCTCAGAACAAGGTCCTGCTAGATTTGCAGCCATACACAAGGTCTTTGGTGCCAGCAACGTTTCCAAGTTGCTTTTGCATATACCAGCTCATGATCGTTGTGAAGCCGTTGTCACAATCGCTTATGAGGCTCAGGCTCGTATCAGAGACCCTGTCTATGGCTGTGTCTCTCACATTTTTGCCTTACAACAACAGGTGGCATGCTTGCAGGCACAGCTGATGCAGGTGAAGGCTCAGCTGGCTCAGAACCTGGTGGAGTCCAGGAACATAGAGAGCAATCATCAGTGGACAGGGAATAATAACAGTGTTTCAGGACAACCAATGAACCATCCATTTTGTCCCACTTACATGAATCCTATATCTCCTCAAAGCTCTCTTGAGTCAATTGATCACAGCAGCATCAATGATGGAATGAGCATGCAAGATATACAAAGCAGAGAGGATTTCCAAATCCAAGCTAAAGAAAGACCATACAACAACAATGACTTGGGGGAGCTGCAAGAACTGGCACTCAGGATGATGAGGAACTGA 642 0.4673 MASASGNGGSNGTGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLAQNLVESRNIESNHQWTGNNNSVSGQPMNHPFCPTYMNPISPQSSLESIDHSSINDGMSMQDIQSREDFQIQAKERPYNNNDLGELQELALRMMRN 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01539 213 Pfam Lateral organ boundaries (LOB) domain 16 114 IPR004883 -
Gma19g01539 213 Coils Coil 96 116 - -
Gma19g01539 213 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 1 212 - -
Gma19g01539 213 ProSiteProfiles LOB domain profile. 15 117 IPR004883 -
Gma19g01539 213 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01539 Gma-Chr19 44748422 44749691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01539 3 213 AS2 family AT2G42430 57.143 2.19e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gma19g01539 LOB 8.2e-37 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01539 19 44748422 44749691 Gma19g01539 19 44748422 44749691 ECH
Gma19g01539 19 44748422 44749691 Gma03g01486 03 41085938 41087950 GST
Gma19g01539 19 44748422 44749691 Gma10g00328 10 3088626 3091396 PCT
Gma19g01539 19 44748422 44749691 Gma13g01012 13 24249122 24251125 PCT
Gma10g00328 10 3088626 3091396 Gma19g01539 19 44748422 44749691 PCT
Gma13g01012 13 24249122 24251125 Gma19g01539 19 44748422 44749691 PCT