Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01536 ATGTGTAAGAATATATATGAAGCTGAGCTTCAATATGGATCACTCTACTCATTAGTTTTGAAGTCCAAAGAAGTAAAATTTTGGAAGAACAAGACCAAGAGTTCCATGGAAGGAAACTTTCTGACCAGAAACACGCATAATAAAGGGGACAGGTTTGGGTTTGAGGAGCATTCATGGCCTGCTAGAAACTATGCTTGTAGCTTTTGCAAGAGAGAGTTCAAGTCTGCTCAAGCCTTGGGTGGCCACATGAATGTTCACAGAAGGGATAGGGCAAGATTGAGATCTTGCTTAACCCCATCATCATGGGTTTCTTCTGAGTTTCCAAATAAACCTAACCCTAGCATTGAGCCTAACCCAACTCATCTTTCATCCTCCTCTCCATCATCATCATGCATATCTAATAACCTGTTGAATTGTGCTCATACTTCTCCACTTTATATCCCTTCTTTGACTTTGTCTTCTTCACTTACTCCAGCTTCTCCCAATGGAGACAAGAAACCAAGAAGAGTATCTCCCCATCTTCTTCCTCTTTTGATTCATCAACGCTGTGAGGAAATTAAGATGAGTAAGAACAAAGCGAGTGGTTTAGGAGTTGAAGAAGTACGGGGTTGTGCAATAGGGGAGGAACTCAAGTTTTTCAAGAGTAGTACTAGTGAGCATAACATCAAGCTGGAGTTGGGAATAGGGTTGATTAAACAACCAGAAAAGTTAGATTTGGAGCTACGATTGGGGCACTGCTAG 741 0.413 MCKNIYEAELQYGSLYSLVLKSKEVKFWKNKTKSSMEGNFLTRNTHNKGDRFGFEEHSWPARNYACSFCKREFKSAQALGGHMNVHRRDRARLRSCLTPSSWVSSEFPNKPNPSIEPNPTHLSSSSPSSSCISNNLLNCAHTSPLYIPSLTLSSSLTPASPNGDKKPRRVSPHLLPLLIHQRCEEIKMSKNKASGLGVEEVRGCAIGEELKFFKSSTSEHNIKLELGIGLIKQPEKLDLELRLGHC 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01536 246 MobiDBLite consensus disorder prediction 101 126 - -
Gma19g01536 246 Gene3D Classic Zinc Finger 53 106 - -
Gma19g01536 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 91 IPR013087 -
Gma19g01536 246 Pfam C2H2-type zinc finger 64 88 - -
Gma19g01536 246 SMART c2h2final6 64 86 IPR013087 -
Gma19g01536 246 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Gma19g01536 246 SUPERFAMILY beta-beta-alpha zinc fingers 61 90 IPR036236 -
Gma19g01536 246 PANTHER OS07G0101800 PROTEIN 30 245 - -
Gma19g01536 246 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 30 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01536 Gma-Chr19 44711098 44713069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01536 52 244 C2H2 Transcription Factor Family AT3G23130 38.191 2.68e-21 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma19g01536 zf-C2H2_6 8.5e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01536 - - gmx:102660083 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01536 19 44711098 44713069 Gma03g01480 03 41033470 41034586 GST
Gma19g01536 19 44711098 44713069 Gma10g00324 10 3051217 3051876 PCT
Gma19g01536 19 44711098 44713069 Gma13g01008 13 24212035 24212670 PCT
Gma10g00324 10 3051217 3051876 Gma19g01536 19 44711098 44713069 PCT
Gma13g01008 13 24212035 24212670 Gma19g01536 19 44711098 44713069 PCT