Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01528 ATGTCAAATCAGGTGGTGAAAGTGCGAAGGGACACGATTGCAGCATGCATGACTTGCCCACTCTGCGGCAAGCTCTTCAGAGAAGCCACAACCATATCCGAATGTCTCCACACGTTTTGCAGGAAGTGCATTTATGATAAAATTACGGATGAGGAGATAGAATGTTGTCCAATATGCAACATTGATTTGGGTTGTGTTCCACTCGAGAAACTGAGGCCAGACCACAGTTTGCAAGATGTAAGGGCCAAAGTTTTCCCCTTAAAGGGAAGAAAGGTGAAGGCACCTGAAGTTGTCACCTCAGTACCATTACCAGCTAGGAGAAAGGAGAGATCTCTTTCATCTTTGGTGGTCAGCACACCAAGGGTATCTACACAGGCAACCATGACAGGAAGAAGAACAAAGCCTACAAGAAAGGCTAGTGGTTTGCGGTCCACTAGTTTTTCCATTGAAAAGCCCATTAAAAAAGAGGAATATTTACTAGAAGATCGTCCTGATAGTTCAAGCTCACCTGACACTTCACATAAGTTTGCTCATAATTCTGGACAGAGCATGTCCCCTTGCGAGGGTAGTCAGTCCATCCCAAATAAAGGATCAGAGAATGGTGCCGAACCATGGGATGCAAAATTGGATCTTTGGAAACCCTTGAATTGTTTAGTAGAAGTCGCAAGTAGGAGTAAATCTTTCAAGTCTAATATTCTTGGGTCTGATGCTAAATTAGAAACCAATCAAGTAAATGAGAGCGATTCTCAAGTTCTGAAAATAAAAAATAAGGAAAATAAACGTAAGGCAAAAATTGAGGATGAAAAGAGTAGCCCTTATCCTGTCTCTTCAGATACAGCAAAACCAAATAAATTGCGCAGAATACGCAAGAAAAAAGAGCCTGCTTCTGGAGAATCTGGCATATCACCCCAAGCTGTGCTGGATTCTGCCAGCAATAATAGACTCTCAAGGACTGGTCCAATTTGGTTCTCCTTAGTGGCTTCTGAAAACCAGGAAGGAGATGATCCCTTGCCCCAAATTCCTGCAAGTTATTTGAGAATAAAGGATGGTAGTGTACCCGTCTCTTTCATCCAAAAATACCTAATGAAGAAACTGGATTTGACAAGTGAAACAGAGGTTGAGATTAAATGTGTGGGACAACCAGTGCTCCCTACATTGCAGTTATATAATTTGGTTGAGTTGTGGCTGGATACGGCGCCCACGTCACAGAGAATTCCAGCAACTATTGGGTCCTCAGCAAAGGATTTTGTCATGGTCTTGGCTTATGCTCGGAGGGTTCCAGACCCTTGA 1290 0.4302 MSNQVVKVRRDTIAACMTCPLCGKLFREATTISECLHTFCRKCIYDKITDEEIECCPICNIDLGCVPLEKLRPDHSLQDVRAKVFPLKGRKVKAPEVVTSVPLPARRKERSLSSLVVSTPRVSTQATMTGRRTKPTRKASGLRSTSFSIEKPIKKEEYLLEDRPDSSSSPDTSHKFAHNSGQSMSPCEGSQSIPNKGSENGAEPWDAKLDLWKPLNCLVEVASRSKSFKSNILGSDAKLETNQVNESDSQVLKIKNKENKRKAKIEDEKSSPYPVSSDTAKPNKLRRIRKKKEPASGESGISPQAVLDSASNNRLSRTGPIWFSLVASENQEGDDPLPQIPASYLRIKDGSVPVSFIQKYLMKKLDLTSETEVEIKCVGQPVLPTLQLYNLVELWLDTAPTSQRIPATIGSSAKDFVMVLAYARRVPDP 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01528 429 MobiDBLite consensus disorder prediction 158 202 - -
Gma19g01528 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 425 - -
Gma19g01528 429 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Gma19g01528 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 425 IPR044807 GO:0004842
Gma19g01528 429 SMART ring_2 19 59 IPR001841 -
Gma19g01528 429 MobiDBLite consensus disorder prediction 112 146 - -
Gma19g01528 429 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Gma19g01528 429 SUPERFAMILY RING/U-box 14 83 - -
Gma19g01528 429 MobiDBLite consensus disorder prediction 170 198 - -
Gma19g01528 429 MobiDBLite consensus disorder prediction 242 304 - -
Gma19g01528 429 MobiDBLite consensus disorder prediction 251 271 - -
Gma19g01528 429 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Gma19g01528 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 111 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01528 Gma-Chr19 44619527 44624921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01528 3 348 C3H Transcription Factor Family AT2G30580 54.179 1.38e-113 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01528 K16277 - gmx:100793731 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01528 19 44619527 44624921 Gma03g01468 03 40911465 40916731 GST
Gma19g01528 19 44619527 44624921 Gma10g00310 10 2862018 2868521 PCT
Gma19g01528 19 44619527 44624921 Gma02g01291 02 14998554 15005478 PCT
Gma10g00310 10 2862018 2868521 Gma19g01528 19 44619527 44624921 PCT
Gma02g01291 02 14998554 15005478 Gma19g01528 19 44619527 44624921 PCT