Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01520 ATGGGGAGCTTTGAAACTGAGCTGAATCTTAAGGCCACAGAGTTGAGGTTGGGATTACCCGGCTGTGATGAAACTCATGACAAAAGTTCATCCAGTAGTGGATCTGTTGTTAGAAGCAACAAGAGATCTTCACCAGAACCCAGTGTGGAAGAGTCCAGGTGCAACTCTAATGGTTCTTCAGATTCTACCACCACAAGTGATCATGATGAAGACAGTGTCCAACCTGCAAAGGTACAAGTAGTGGGGTGGCCACCAATTAGATCTTTTAGGAAGAACAGTCTGCAACAACAGAAGAAGGTGGAGCAGCAGGGTGATGGAAGTGGAACGTATTTGAAAGTGAGCATGGCTGGTGCACCTTACTTGAGGAAGATAGATCTGAAGGTTTACAATAGCTACCCAGAACTCCTCATGGCCTTGCAAAATTTGTTCAAGTGCACATTTGGTGAATATTCAGAGAGGGAAGGTTACAATGGATCTGAATACGCTCCTACTTATGAAGACAAGGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGAACATGTTTGTATCCTCCTGCAAGAGGCTGAAAATAATCAAAGGATCAGAAGCAAAGGGGTTGGGTTGTTTGTGA 615 0.4472 MGSFETELNLKATELRLGLPGCDETHDKSSSSSGSVVRSNKRSSPEPSVEESRCNSNGSSDSTTTSDHDEDSVQPAKVQVVGWPPIRSFRKNSLQQQKKVEQQGDGSGTYLKVSMAGAPYLRKIDLKVYNSYPELLMALQNLFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLKIIKGSEAKGLGCL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01520 204 SUPERFAMILY CAD & PB1 domains 104 192 - -
Gma19g01520 204 PANTHER AUXIN-INDUCED PROTEIN 7 202 - -
Gma19g01520 204 MobiDBLite consensus disorder prediction 18 77 - -
Gma19g01520 204 Pfam AUX/IAA family 13 202 IPR033389 -
Gma19g01520 204 ProSiteProfiles PB1 domain profile. 108 200 IPR000270 GO:0005515
Gma19g01520 204 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 202 IPR003311 GO:0005634|GO:0006355
Gma19g01520 204 MobiDBLite consensus disorder prediction 25 63 - -
Gma19g01520 204 Gene3D - 102 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01520 Gma-Chr19 44553574 44554727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01520 99 201 B3 DNA Binding Superfamily AT2G46530 34.951 3.79e-12 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma19g01520 AUX_IAA 2.3e-59 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01520 K14484 - gmx:100792134 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01520 19 44553574 44554727 Gma03g01460 03 40832803 40834392 GST
Gma19g01520 19 44553574 44554727 Gma10g00303 10 2805057 2806827 PCT
Gma19g01520 19 44553574 44554727 Gma02g01300 02 15072998 15074642 PCT
Gma10g00303 10 2805057 2806827 Gma19g01520 19 44553574 44554727 PCT
Gma02g01300 02 15072998 15074642 Gma19g01520 19 44553574 44554727 PCT