Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01506 ATGTTCCCCACTGCTATTTCCAATTCAACTTCTTTGTCTGAGGATGCCAGTGTTTCTTCTGGGACAAAAGTTCAGGACTTGGGAGGACTCAATCCCTGGGTCTCAAACATTTCTCCTCAACAACAACAACAGCCTCAAAAGATCAAGAAAAAGAGAAGCCTACCTGGAAATCCAGACCCAGATGCTGAAGTGATAGCCTTATCTCCGAAGACCCTTTTGGCCACTAACAGATTTGTTTGTGAGATCTGTCACAAGGGTTTCCAGAGAGATCAGAACCTGCAGCTTCATAGGAGGGGCCACAACCTCCCTTGGAAGCTGAAGCAAAGGAGCAGCAAAGAGGTGAAAAAGAAAGCCTACGTTTGCCCTGAACCTTCATGCGTTCACCACGACCCCTCAAGAGCCCTGGGGGATCTTACAGGAATCAAGAAACACTTCTGCAGAAAGCATGGAGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATATACGCGGTTCAGTCAGATTGGAAAGCTCACTCAAAAACATGTGGTACTAGAGAATATAGATGTGACTGTGGAATCCTTTTTTCCAGGAAGGATAGTTTCATAACACACAGGGCGTTCTGTGATGCATTGGCGGAAGAAAGTGCTAGACTATCAGCAAATCAATTAGCTGCCGTCGCCACCACCACATCAAATCCATTCCAATCTCTCCATCTTTTCCAAACCCAACAACAGAACTTCCAAAACCACCAAATCAGCAGTTTCAACCAATGGGACTCATCTCAAGAAAACCCTAACCCTACCAATATTATTGCCACTACTTCCCTCCACATCAAGCCAGAGTCTCAAACCTTCCACAACCCCACCCTCTCTTCACTTCTCCAACAGCAACAACCTACCAACAACAAGGGCATGATAGCCTCAACCTTCGGGAACCTCCACGTGGCCACGCAAGCATCTGCCACGTCAGCATACATGTCAGCCACTGCGCTGCTTCAAAAGGCTGCAACCGTTGGAGCCGCTGCCATCACGGGCCCTGTTGGGCCACAACAGCGCGTGACGGGTCACGTGAATCACGTGACCCACCACCTCGGCTCGGGCGAGTTCGGAATCGGAACAGTGAGTCAACTCGACCCAGTGGTGGCGGTGCCAGATAACAACTACATGAGAACAACGTTCAAGGGTGACCGTCTCACAAGGGACTTTCTGGGTCTCACGGCAGATGCTACCGGCGGCGCGGTTGACGTTAGCACCAACGTGAAGGATATGTTAACGTTCGCGGGGGGCGTAGAGTACCACCAACCGCACCGTCAGCATCACCACCACGCGCTTCTGAAGCCCCAACAAGGCTTCGGTTTCCTTGGGACAGCCACTGCCCCCGAGACGTGGGGGAATTGTTAG 1383 0.5047 MFPTAISNSTSLSEDASVSSGTKVQDLGGLNPWVSNISPQQQQQPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICHKGFQRDQNLQLHRRGHNLPWKLKQRSSKEVKKKAYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGILFSRKDSFITHRAFCDALAEESARLSANQLAAVATTTSNPFQSLHLFQTQQQNFQNHQISSFNQWDSSQENPNPTNIIATTSLHIKPESQTFHNPTLSSLLQQQQPTNNKGMIASTFGNLHVATQASATSAYMSATALLQKAATVGAAAITGPVGPQQRVTGHVNHVTHHLGSGEFGIGTVSQLDPVVAVPDNNYMRTTFKGDRLTRDFLGLTADATGGAVDVSTNVKDMLTFAGGVEYHQPHRQHHHHALLKPQQGFGFLGTATAPETWGNC 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01506 460 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 440 - -
Gma19g01506 460 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Gma19g01506 460 MobiDBLite consensus disorder prediction 1 62 - -
Gma19g01506 460 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 8 440 - -
Gma19g01506 460 Gene3D Classic Zinc Finger 112 202 - -
Gma19g01506 460 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Gma19g01506 460 SUPERFAMILY beta-beta-alpha zinc fingers 77 174 IPR036236 -
Gma19g01506 460 Gene3D Classic Zinc Finger 74 101 - -
Gma19g01506 460 MobiDBLite consensus disorder prediction 1 50 - -
Gma19g01506 460 Pfam Zinc finger, C2H2 type 78 100 IPR013087 -
Gma19g01506 460 SMART c2h2final6 119 149 IPR013087 -
Gma19g01506 460 SMART c2h2final6 154 174 IPR013087 -
Gma19g01506 460 SMART c2h2final6 78 100 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01506 Gma-Chr19 44423330 44426960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01506 15 449 IDZ Gene Family AT4G02670 50.559 5.02e-129 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma19g01506 zf-C2H2 0.01 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01506 K25870 - gmx:100788975 899.042
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01506 19 44423330 44426960 Gma03g01450 03 40719829 40723516 GST
Gma19g01506 19 44423330 44426960 Gma10g01507 10 42174695 42178237 PCT
Gma19g01506 19 44423330 44426960 Gma20g02198 20 49099534 49103482 PCT
Gma10g00287 10 2621082 2624594 Gma19g01506 19 44423330 44426960 PCT
Gma20g02198 20 49099534 49103482 Gma19g01506 19 44423330 44426960 PCT