Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01469 ATGGCTACGCCGCCAAATAGCAGGCTTCACACCATGTTGCGGGCATCAGTGCAATCAGTTCAGTGGACTTACAGCCTCTTCTGGCAACTTTGTCCACAACAAGGGATATTGACTTGGGGTGATGGATACTACAACGGAGCAATTAAGACACGGAAGACAGTGCAAGCAATGGAGGTAAGCACTGAGGAAGCGTCTCTGCAAAGAAGCGAGCAACTAAGGGAGTTATATGAATCTTTGTCTGCTGAGGAGACAATAAACACGCAAACACGAAGGCCATGTGCTGCTTTGTCGCCTGAGGATCTAACTGAATCCGAATGGTTCTATTTGTTGTGTGTCTCTTTCTCCTTTCATCTTGGTATCGGGTTGCCCGGAACAGCATATGCCAGGAGGCAGCATTTATGGCTCAGTGGTGCAAACGAAGTAGACAGCAAAACTTTTTCAAGAGCTATTCTTGCCAAGACAGTGGTGTGTATTCCTGTGTTGGAGGGCGTCGTTGAGTTGGGCACAACCGATAAGATCGAAGAAGACCTAAATTTCATCCAACACATAAAGAGCTTCTTCATAGATCAGCAGCCTCCTCCTCCCACGGCAAAGCCTGCACTGTCAGAGCACTCCACCTCCAATCTCACTTCTTCATACCCTCTTGTTATTGTTCCTGTCACTGCTGCCGCCACCGCCAATAATGTTCTCATCCAAAACGACATGAACATTGTTGATAAAGGAGAAGCTATTATATTGAATAATAATAATAATAATACCGAAGCAGAATTATTAGCAGACCCTAACAGTAACAGTTTCATACCGAGCGAGCTAATGGAGCTGGACCACCAGTTGGAGGAATTCGGGGTCGGATCACCTGGAGATGGCTCCAATCACTTGGATTCCTTCCCCAAAGAGGAGTCAATGGCACTGTGTGCTGCAGGGTTGGAGCTCCTTCAACTTCAACGACCACCAGCTCCAGCACATCCTCCCACAGAAAATCTAGCACAAGGCGACACAGACACCCACTACTCTCAAACAGTGTCCAGCATCCTTAAAAAGAACTCCAGCAGGTGGTGGCCGGATTCACCCTCCGTCAACCACCCCACTGACTCCTTCCAATCAGCTTTCAACAAATGGAAATCCGACACTGACAACCACCACCACTATTTCCACGAGACGGTGGCCGATGGCACCTCGCAGGGGCTCCTCAAGTACATTTTGTTCAACGTCCCTTACTTGCACGCCAACCGGCTCAAGGGCACGGGAGCTTCGTCATACGAGACTAATCACGTGATGGCGGAGCGCCGCAGAAGGGAGAAGTTGAATGAGAGGTTTCTCATTCTACGTTCGATGGTACCTTTCATGATGAGGATGGACAAGGAGTCCATTCTGGAAGATACCATCCACTACATCAAACAGTTAAGAGAGAAGATTGAGAGTCTCGAAGCGCGTGAGCGCCTCCGGGGGAAGAGGAGAGTGAGGGAGGTGGAGGTTTCGATCATAGAGAGCGAGGCGCTGTTGGAGGTGGAGTGTGTGCATAGGGAAAGGTTGTTGCTGGATGTGATGACAATGTTGAGGGAGTTAGGGGTGGAAGTGATGATGGTGCAGTCTTGGGTTAAGGATGATGGAGTGTTTGTGGCGGAGATGAGGGCCAAGGTGAAGGAAAATGGTAACGGGAAAAAGGCTAGTGTTGTTGAAGTGAAAAATGCCCTTAACCAGATTATACCACATCATGAGCCATACACACTTTGTTCCAATGATCACTTTTAA 1752 0.4852 MATPPNSRLHTMLRASVQSVQWTYSLFWQLCPQQGILTWGDGYYNGAIKTRKTVQAMEVSTEEASLQRSEQLRELYESLSAEETINTQTRRPCAALSPEDLTESEWFYLLCVSFSFHLGIGLPGTAYARRQHLWLSGANEVDSKTFSRAILAKTVVCIPVLEGVVELGTTDKIEEDLNFIQHIKSFFIDQQPPPPTAKPALSEHSTSNLTSSYPLVIVPVTAAATANNVLIQNDMNIVDKGEAIILNNNNNNTEAELLADPNSNSFIPSELMELDHQLEEFGVGSPGDGSNHLDSFPKEESMALCAAGLELLQLQRPPAPAHPPTENLAQGDTDTHYSQTVSSILKKNSSRWWPDSPSVNHPTDSFQSAFNKWKSDTDNHHHYFHETVADGTSQGLLKYILFNVPYLHANRLKGTGASSYETNHVMAERRRREKLNERFLILRSMVPFMMRMDKESILEDTIHYIKQLREKIESLEARERLRGKRRVREVEVSIIESEALLEVECVHRERLLLDVMTMLRELGVEVMMVQSWVKDDGVFVAEMRAKVKENGNGKKASVVEVKNALNQIIPHHEPYTLCSNDHF 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01469 583 Gene3D - 416 479 IPR036638 GO:0046983
Gma19g01469 583 SMART finulus 425 474 IPR011598 GO:0046983
Gma19g01469 583 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 418 480 IPR036638 GO:0046983
Gma19g01469 583 Pfam Helix-loop-helix DNA-binding domain 422 469 IPR011598 GO:0046983
Gma19g01469 583 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 419 468 IPR011598 GO:0046983
Gma19g01469 583 PANTHER TRANSCRIPTION FACTOR TT8 8 571 - -
Gma19g01469 583 Coils Coil 458 478 - -
Gma19g01469 583 PANTHER TRANSCRIPTION FACTOR TT8 8 571 - -
Gma19g01469 583 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 187 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01469 Gma-Chr19 43935069 43942948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01469 337 571 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 43.621 8.63e-50 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma19g01469 bHLH-MYC_N 2.1e-47 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01469 - - gmx:100780422 1117.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01469 19 43935069 43942948 Gma19g01469 19 43935069 43942948 ECH
Gma19g01469 19 43935069 43942948 Gma03g01406 03 40213203 40220723 GST
Gma19g01469 19 43935069 43942948 Gma10g00249 10 2289288 2298227 PCT
Gma10g00249 10 2289288 2298227 Gma19g01469 19 43935069 43942948 PCT