Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01404 ATGGAGCTAGCTTTGAGCTTAGGCGACACACCCAAGCCCTTCTCTTTGCCCGCAAAAAATGATTCTGTGAGTTTCAAAATAGCACTGGGTGACGACAAAAGGGTTTCTTCAGATCCACCCGTTCAGCTCGACCTTCTTCCTTCAACACCAGTTCTTCCTTCTTCACGCCTTCGAATTCCATGGCTCTCCGATGCACTGGGTATGGAACGTGTGACATCAGAGATTCCGGTGAGGGCGGTGGATGACACTGACGATGGTGCTGCACTTTCATCCCCCAACAGTGCAGTGTCATCTTTTCAGATGGATTTTTGTTTCAGGAACAGTAGAAAGTCTTGTGAGGGTGCCAGCGACGAGGACGACGAAAATGGCTCAACAAGGAAGAAACTTAGACTCTCCAAACAACAATCAGTTTTCCTCGAAGAGAGCTTCAAAGAACACACCACTCTCAATCCCAAGCAAAAACTTGCGCTTGCAAAACAGTTAAATCTCCGTCCACGTCAAGTGGAAGTTTGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAGACAGAGGTGGATTGTGAGTACTTAAAGAGATGTTGCGAGAGTCTGACAGAAGAGAATAGGAGGTTGCAGAAGGAACTGCAAGAACTGAGGGCTTTGAAAACATGTCAGCCATTTTTCATGCAGCTTCCAGCTACCACTCTCACCATGTGTCCCTCCTGTGAACGCGTCGCCACCAACACCACCACCACCGGCGCCGCCGCCGCAGCTGCCACAACCAACAATTATAATAATGTCGCTTCTGCCCCCATGGCCACCAACAATAATAGCGTTTCTCAAATCTCTGCCGTGTTGTCTGTTGATCGACAAGCCCGTAATATTGCCCTGACCTAA 879 0.4858 MELALSLGDTPKPFSLPAKNDSVSFKIALGDDKRVSSDPPVQLDLLPSTPVLPSSRLRIPWLSDALGMERVTSEIPVRAVDDTDDGAALSSPNSAVSSFQMDFCFRNSRKSCEGASDEDDENGSTRKKLRLSKQQSVFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKELQELRALKTCQPFFMQLPATTLTMCPSCERVATNTTTTGAAAAAATTNNYNNVASAPMATNNNSVSQISAVLSVDRQARNIALT 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01404 292 ProSitePatterns 'Homeobox' domain signature. 157 180 IPR017970 GO:0000981|GO:0006355
Gma19g01404 292 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 33 261 - -
Gma19g01404 292 CDD homeodomain 126 183 IPR001356 GO:0003677
Gma19g01404 292 Pfam Homeodomain 126 180 IPR001356 GO:0003677
Gma19g01404 292 SUPERFAMILY Homeodomain-like 112 183 IPR009057 -
Gma19g01404 292 ProSiteProfiles 'Homeobox' domain profile. 122 182 IPR001356 GO:0003677
Gma19g01404 292 SMART HOX_1 124 186 IPR001356 GO:0003677
Gma19g01404 292 Gene3D - 130 180 - -
Gma19g01404 292 PANTHER - 33 261 - -
Gma19g01404 292 Coils Coil 188 215 - -
Gma19g01404 292 SMART halz 182 225 IPR003106 GO:0006355|GO:0043565
Gma19g01404 292 CDD bZIP 175 214 - -
Gma19g01404 292 Pfam Homeobox associated leucine zipper 182 216 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01404 Gma-Chr19 43308779 43310580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01404 79 238 Homeobox Transcription Factor Family AT3G60390 60.753 9.59e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma19g01404 Homeodomain 7.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01404 K09338 - gmx:100810885 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01404 19 43308779 43310580 Gma19g01404 19 43308779 43310580 ECH
Gma19g01404 19 43308779 43310580 Gma03g01339 03 39559599 39561403 GST
Gma19g01404 19 43308779 43310580 Gma02g01582 02 31994549 31997062 PCT
Gma02g01582 02 31994549 31997062 Gma19g01404 19 43308779 43310580 PCT