Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01393 ATGGCCGATGCCGAGGATATTCAACCCCTCGTTTGCGATAATGGAACCGGAATGGTCAAGGCTGGTTTTGCTGGAGATGATGCACCGAGGGCTGTGTTCCCTAGCATTGTGGGGCGTCCACGTCACACTGGGGTGATGGTTGGGATGGGGCAGAAGGATGCGTATGTTGGGGACGAGGCTCAATCCAAGAGGGGTATTTTGACTCTCAAATACCCAATTGAGCATGGAATTGTGAGCAATTGGGACGACATGGAGAAGATCTGGCATCACACTTTCTACAACGAGCTTCGTGTGGCTCCTGAGGAACACCCTGTGCTTCTCACCGAGGCACCTCTTAATCCTAAGGCTAATCGTGAGAAAATGACTCAGATCATGTTTGAGACCTTCAACACCCCTGCTATGTATGTCGCTATCCAGGCCGTGCTTTCCCTTTATGCTAGTGGCCGTACAACTGGTATTGTTCTGGACTCTGGAGATGGTGTCAGTCACACGGTTCCTATCTACGAAGGTTATGCCCTCCCACATGCAATCCTGCGTTTGGACCTTGCAGGGCGTGATCTCACTGATGCCCTCATGAAAATCTTGACTGAGCGTGGTTACACTTTCACCACATCTGCGGAACGGGAAATTGTGAGGGACATGAAGGAGAAACTGGCCTACATTGCTCTGGATTATGAGCAGGAGTTGGAAACTGCCAAGACCAGTTCAGCTGTTGAAAAGAGCTATGAGCTACCTGATGGGCAGGTGATCACGATTGGCGCTGAACGATTCCGATGCCCTGAAGTTCTGTTCCAGCCATCCATGATTGGGATGGAATCTCCTGGTATCCATGAGACAACATATAACTCTATCATGAAGTGTGATGTCGACATTAGGAAGGATCTCTATGGTAACATTGTCTTGAGTGGTGGTTCCACAATGTTCCCTGGCATTGCTGATAGGATGAGCAAGGAGATTACAGCATTGGCACCAAGTAGCATGAAAATTAAGGTTGTAGCACCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGCTCCATCTTGGCTTCCCTCAGCACCTTCCAACAGATGTGGATTGCGAAGGCAGAGTATGATGAATCTGGACCATCAATCGTACACAGGAAATGCTTCTAA 1134 0.4912 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYTFTTSAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01393 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Gma19g01393 377 PANTHER ACTIN-97 1 376 - -
Gma19g01393 377 Pfam Actin 5 377 IPR004000 -
Gma19g01393 377 Gene3D - 10 371 - -
Gma19g01393 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Gma19g01393 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Gma19g01393 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Gma19g01393 377 PANTHER ACTIN 1 376 IPR004000 -
Gma19g01393 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Gma19g01393 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Gma19g01393 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Gma19g01393 377 PRINTS Actin signature 28 37 IPR004000 -
Gma19g01393 377 PRINTS Actin signature 51 62 IPR004000 -
Gma19g01393 377 PRINTS Actin signature 63 85 IPR004000 -
Gma19g01393 377 PRINTS Actin signature 117 130 IPR004000 -
Gma19g01393 377 PRINTS Actin signature 142 161 IPR004000 -
Gma19g01393 377 PRINTS Actin signature 238 254 IPR004000 -
Gma19g01393 377 Gene3D - 140 340 - -
Gma19g01393 377 SMART actin_3 7 377 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01393 Gma-Chr19 43228315 43231093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01393 1 377 Cytoskeleton Gene Families AT5G09810 96.286 0.0 765
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01393 K10355 - gmx:100807341 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01393 19 43228315 43231093 Gma19g01393 19 43228315 43231093 ECH
Gma19g01393 19 43228315 43231093 Gma03g01329 03 39469589 39472586 GST
Gma19g01393 19 43228315 43231093 Gma02g01598 02 32562389 32565617 PCT
Gma02g01598 02 32562389 32565617 Gma19g01393 19 43228315 43231093 PCT