Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01392 ATGTTTTCGTGGCTTGCAAGACTAGTTTCGTCGTGCTTGAGGCCTGTGAGGCGCTATGCCCGCAtgagcaaagatggtgatgatgatgatgatggtgttgatgagtctacttcatcagttgaagactctctTCTGTGGCGTAGAGACCTTTTGAAACATTCTTGTGGTGAATTCTCCTTTGCTGTGGTTCAGGCCAATGAAGTTATTGAGGATCATAGTCAGGTCGAGATTGGCTCTGACGCCATCTTTGTTGGGGTTTATGATGGCCATGGTGGTCCTGAAGCTTCACGGTTCGTCAGAGATCACCTCTTCCAGCACCTAATGAGGATTGCTCAGGATAATGGAAATATCTCTGAAGAAATTCTCAGAGGTGCTGTTACTGCTACAGAGGATGGGTTTATGAAACTTGTTCATAGGAGTTATATGATAAAGCCTTTGATTGCATCAATTGGTTCCTGTTGTCTGGTTGGTGTTATCTGGAAAGGGACTCTATATATCGCCAATCTTGGAGACTCCCGTGCCGTTGTTGGTTCTTTAGGTAGATCTAACAAGATCATTGCCGAGCAGCTGACTAGAGAGCACAATGCTTGTAGGGAGGAGATTAGACAAGAACTTAGGTCTTTGCATCCACAAGATTCACAAATTGTAGTAATGAATCGTGGAACATGGCGTGTCAAAGGCATCATCCAGGTATCGAGATCCATAGGAGATGCATATTTGAAGTGGCCGCAGTTCTCTCTCGATCCATCATTCCCACGTTTCCACATGCCTGAACCTATAACCCAACCTGTGCTAACAGCAGAACCATCTCTATGTTCAAGAGTTTTGCAGCCCCATGACAAATTTCTTATATTTGCGTCTGATGGACTTTGGGAATACATGACAAATCAGCAAGCAGCCGAGATTGTTCAGAAGAACCCACGAAATGGGGTTGCAAGAAAACTTGTTAAGGCTGCTCTAAAGGAGGCAGCTAATAAAAGGAAAATGAAATATAAAGAGCTTCAGAAGATTGAGAAAGGAAACAGAAGGATTTTTCATGATGATATCACTGTGATTGTTGTCTTCATAGACCATGAGTTGCTCGGGAAGAAAATTACTGTGCCAGAGTTGTCCATCAGAGGGTTCATTGACTCGGCTGGACCGTCAAATTTTAAAAGTGTCCAGGAGTTTATGTGA 1176 0.4124 MFSWLARLVSSCLRPVRRYARMSKDGDDDDDGVDESTSSVEDSLLWRRDLLKHSCGEFSFAVVQANEVIEDHSQVEIGSDAIFVGVYDGHGGPEASRFVRDHLFQHLMRIAQDNGNISEEILRGAVTATEDGFMKLVHRSYMIKPLIASIGSCCLVGVIWKGTLYIANLGDSRAVVGSLGRSNKIIAEQLTREHNACREEIRQELRSLHPQDSQIVVMNRGTWRVKGIIQVSRSIGDAYLKWPQFSLDPSFPRFHMPEPITQPVLTAEPSLCSRVLQPHDKFLIFASDGLWEYMTNQQAAEIVQKNPRNGVARKLVKAALKEAANKRKMKYKELQKIEKGNRRIFHDDITVIVVFIDHELLGKKITVPELSIRGFIDSAGPSNFKSVQEFM 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01392 391 Pfam Protein phosphatase 2C 79 324 IPR001932 -
Gma19g01392 391 SMART PP2C_4 37 354 IPR001932 -
Gma19g01392 391 PANTHER ALPHABET, ISOFORM E-RELATED 6 376 - -
Gma19g01392 391 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 6 376 - -
Gma19g01392 391 Gene3D - 33 364 IPR036457 -
Gma19g01392 391 CDD PP2Cc 58 356 IPR001932 -
Gma19g01392 391 SUPERFAMILY PP2C-like 63 357 IPR036457 -
Gma19g01392 391 ProSiteProfiles PPM-type phosphatase domain profile. 57 356 IPR001932 -
Gma19g01392 391 Coils Coil 187 207 - -
Gma19g01392 391 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01392 Gma-Chr19 43216338 43220108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01392 1 384 PP2C-type Phosphatase Gene Family AT5G06750 68.123 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01392 K01102 - gmx:100806476 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01392 19 43216338 43220108 Gma10g00813 10 11999051 11999866 PCT
Gma19g01392 19 43216338 43220108 Gma02g01599 02 32568035 32573439 PCT
Gma10g00813 10 11999051 11999866 Gma19g01392 19 43216338 43220108 PCT
Gma02g01599 02 32568035 32573439 Gma19g01392 19 43216338 43220108 PCT