Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01386 ATGACTGAAGGGTTAGGTGAAGCTGTTGGGGAGTACTCCATGTGCCTTCATGTGAGCAAAGGCGAAGAGGGTATGAGAAAAGAGATTATTTTAGCAGTGGGATTTGATGAGTGGTCAAGAGGAAGCGTGGATGATTTGATTCGGGAAGCTGAGAGGGAAGCATACTATTCTGTCTTGCGTGCTTTCAGAGGTCAATCCGTCGTTGGTCTTTCGTGGCTTGTGACTTGTGACAGAGATGGGCGGGGTGAAATAAAAGTGAATGAGGCTGGATGGCAACTAGTTTCACCAAGGAATGCTCCTGCTGCAAATTCAGTTCTTTCAAGGGATGTTGCTTTCAGCCACTTCTTTGTATTCCGATTTGACTTCAATGATTGGAAGTCCTTTTTATTACCCTGTACTGAGCCTATTATTATTTCCCTCTCTCCTTGCTCCTTGCTCCAAAACCCCTTCTTCAGGGTCACCGCTGTCAGGGGTTTCCTCTGCAATCTCTTGTACTTGAAGCTCGTTCCTTCTTCCGGATCTCGATCTATGGATACCCGCAAGAGGGGAAGACCCGAACCCGGCTTCAGCTTAAATGGCGGATTCAAGAAATCCAAGCAAGAAATGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGTTGCCCATTTGGTGAGGGCTGCCACTTCTTGCACTATGTTCCCGGTGGTTATAATGCAGTTGCCCATATGATGAATCTAACACCTGCAGCACCTCCAGCATCAAGAAATGTTGCAGCTCTGCCTCCTGTACCAAATGGTTCCGCACCACCTGCCGTTAAGACCCGCATATGCAACAAGTTTAATACTGCTGAAGGTTGCAAATTTGGTGACAAATGCCATTTTGCTCATGGTGAATGGGAGCTTGGCAAGCATATTGCTCCATCATTTGATGACCATCGCACCATGGGACCCACTGGAGTAGGTCGTCTTGCTGGTCGAATGGAGCCCCCTCCTGGCCCTGCTGCAAGTTTTGGGGCCAATGCCACAGCCAAGATCAGCGTAGAAGCTTCCCTGGCTGGAGCTATCATTGGGAAGGGTGGCGTGAACTCAAAACAGATCTGCCGCCAAACTGGAGCCAAACTTTCAATTCGAGAGCATGAATCTGACCCAAATCTTAGAAACATTGAACTTGAGGGAAGTTTTGAGCAAATCAAAGAAGCAAGTAACATGGTAAAGGATTTACTTTTGACCCTGCAAATGTCTGCACCACCTAAAACAACCCCAGGTGTTCCTGGCGCACCTGCCTCTCATGGAAGCAATTTTAAGACGAAGCTGTGTGAGAATTTTACAAAAGGGTCTTGCACGTTTGGAGATAGATGTCACTTTGCACATGGAGCTGCTGAATTGCGTAAATCAGGAGTATGA 1416 0.4725 MTEGLGEAVGEYSMCLHVSKGEEGMRKEIILAVGFDEWSRGSVDDLIREAEREAYYSVLRAFRGQSVVGLSWLVTCDRDGRGEIKVNEAGWQLVSPRNAPAANSVLSRDVAFSHFFVFRFDFNDWKSFLLPCTEPIIISLSPCSLLQNPFFRVTAVRGFLCNLLYLKLVPSSGSRSMDTRKRGRPEPGFSLNGGFKKSKQEMESLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAHMMNLTPAAPPASRNVAALPPVPNGSAPPAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKHIAPSFDDHRTMGPTGVGRLAGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKDLLLTLQMSAPPKTTPGVPGAPASHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRKSGV 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01386 471 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 334 416 IPR036612 GO:0003723
Gma19g01386 471 CDD KH-I 346 409 - -
Gma19g01386 471 ProSiteProfiles Zinc finger C3H1-type profile. 210 238 IPR000571 GO:0046872
Gma19g01386 471 ProSiteProfiles Zinc finger C3H1-type profile. 275 303 IPR000571 GO:0046872
Gma19g01386 471 SUPERFAMILY CCCH zinc finger 274 306 IPR036855 GO:0046872
Gma19g01386 471 SMART kh_6 343 413 IPR004087 GO:0003676
Gma19g01386 471 Gene3D - 270 307 - -
Gma19g01386 471 Gene3D - 436 469 - -
Gma19g01386 471 MobiDBLite consensus disorder prediction 173 195 - -
Gma19g01386 471 SMART c3hfinal6 275 302 IPR000571 GO:0046872
Gma19g01386 471 SMART c3hfinal6 210 237 IPR000571 GO:0046872
Gma19g01386 471 SMART c3hfinal6 437 463 IPR000571 GO:0046872
Gma19g01386 471 ProSiteProfiles Zinc finger C3H1-type profile. 437 464 IPR000571 GO:0046872
Gma19g01386 471 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 185 470 - -
Gma19g01386 471 Gene3D K Homology domain, type 1 340 435 IPR036612 GO:0003723
Gma19g01386 471 SUPERFAMILY CCCH zinc finger 211 236 IPR036855 GO:0046872
Gma19g01386 471 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 185 470 - -
Gma19g01386 471 ProSiteProfiles Type-1 KH domain profile. 344 408 - -
Gma19g01386 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 277 302 IPR000571 GO:0046872
Gma19g01386 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 438 462 IPR000571 GO:0046872
Gma19g01386 471 Pfam RNA-binding, Nab2-type zinc finger 215 235 - -
Gma19g01386 471 SUPERFAMILY CCCH zinc finger 436 467 IPR036855 GO:0046872
Gma19g01386 471 Pfam KH domain 347 409 IPR004088 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01386 Gma-Chr19 43156991 43171868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01386 64 126 Non-SMC Element family AT3G20760 52.381 2.67e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma19g01386 KH_1 7.4e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01386 - - gmx:100803981 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01386 19 43156991 43171868 Gma19g01386 19 43156991 43171868 ECH
Gma19g01386 19 43156991 43171868 Gma03g01323 03 39428907 39432336 GST
Gma19g01386 19 43156991 43171868 Gma02g01614 02 32827038 32832703 PCT
Gma02g01614 02 32827038 32832703 Gma19g01386 19 43156991 43171868 PCT