Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01380 ATGGAGGGTTTGAAGAAGAGAAAGCTGGAGCTGGACGAAGCAGGCAACGGTGAATTGGCTTCCAAGGAAGAGCTTCGCTTCCTCATTGAACCTCTCGCTAAACCCCAGCTCGTCGATCTTCTTGCTAAACTAGGGTCCCAATATCCTTCAATTGCAGAAGAAATAAAAAGTATTGCAAGTGCAGATCCTGCCCATCGAAAGCTTTTTGTTCGTGGCTTGGCCTGGAATACCACTTCAGAAACATTGCGTGCTGCATTTCAAGAGCACGGAGAAATTGAGGAAGGAGCTGTGATCTTTGATAAAGTGACAGGAAAATCCCGTGGCTATGGATTTATAACTTTCAAAAATATGGAATCAACTCAGCAAGCATTGAGAGCCCCTAGCAAGTTAATTGATGGGAGATTGGCTGTCTGTAATCTAGCTTGTGAGAGTCTAAGCGGAACAAGTAGTGCTCCTGATCTTTCCCTGAGGAAGCTTTATATTGGAAGCTTATCACCAGAAGTCACAAGTGAAATTCTCCTTAACTATTTTGCGAGGCATGGTGAAATAGAGGAAGGTTCAGTTGCATATGACAGGGATACAAATGAATCACGTGGTTTTGGCTTTGTCACATACAAGACAGCGGAGGCTGCAAAGAAGGCCATAGATGACGTAGAAAAGATGCTCGGGGGAAGGAATATAGTTGTAAAATATGCTGATTCCCACAAAGGTAAAACTGGCCAGCCGCCATTTCCTTCTGGAGTGGTTCCAATGGCACCCTTACCTATGAACCCAGGATACATGCAACCTGGAAAAGGTCATGTTGGTTCAGGGCCCCCAATCAATTACAGTTACCCCCAAACAGTAGCACCATATTCTGCATCTCCTTATCCAAACCCTCCTCCCACTGCACCCTCACTTTATCCAATACAATGGCAGATTCCTTATCCTCAAGTTTCTGCAAAGAAAGACCAACATGGGGATCCGCCTGCTGCTGTAGGAATGAACCCTTATTACTATCCCAAGCAATGA 1011 0.45 MEGLKKRKLELDEAGNGELASKEELRFLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPAHRKLFVRGLAWNTTSETLRAAFQEHGEIEEGAVIFDKVTGKSRGYGFITFKNMESTQQALRAPSKLIDGRLAVCNLACESLSGTSSAPDLSLRKLYIGSLSPEVTSEILLNYFARHGEIEEGSVAYDRDTNESRGFGFVTYKTAEAAKKAIDDVEKMLGGRNIVVKYADSHKGKTGQPPFPSGVVPMAPLPMNPGYMQPGKGHVGSGPPINYSYPQTVAPYSASPYPNPPPTAPSLYPIQWQIPYPQVSAKKDQHGDPPAAVGMNPYYYPKQ 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01380 336 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 157 234 IPR000504 GO:0003723
Gma19g01380 336 SMART rrm1_1 158 230 IPR000504 GO:0003723
Gma19g01380 336 SMART rrm1_1 67 139 IPR000504 GO:0003723
Gma19g01380 336 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 227 IPR000504 GO:0003723
Gma19g01380 336 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 134 IPR000504 GO:0003723
Gma19g01380 336 Gene3D - 145 242 IPR012677 -
Gma19g01380 336 PANTHER UBP1-ASSOCIATED PROTEIN 2C-LIKE 17 336 - -
Gma19g01380 336 CDD RRM_RBM24_RBM38_like 66 141 - -
Gma19g01380 336 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 166 IPR000504 GO:0003723
Gma19g01380 336 Gene3D - 57 144 IPR012677 -
Gma19g01380 336 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 17 336 - -
Gma19g01380 336 SUPERFAMILY RNA-binding domain, RBD 59 143 IPR035979 GO:0003676
Gma19g01380 336 MobiDBLite consensus disorder prediction 313 336 - -
Gma19g01380 336 SUPERFAMILY RNA-binding domain, RBD 151 249 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01380 Gma-Chr19 43093794 43097827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01380 149 268 C2H2 Transcription Factor Family AT2G19380 33.071 5.15e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01380 K12741 - gmx:100802911 659.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01380 19 43093794 43097827 Gma19g01380 19 43093794 43097827 ECH
Gma19g01380 19 43093794 43097827 Gma03g01315 03 39340414 39344546 GST