Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01359 ATGGATTCGAATTCGCGCTACCAAGTTCAGCAGCAACACCAACACAATTCTGGGTTACTTCGATTTCGTTCTGCCCCTCCCGCAAATCTCAAACAACAAGGCGAAGCTGCCAATAATAATGGGAGCGCGTGGGAGGGTTCTGAACCGCTTTTGAGATTCTTGAATTCCGGGGACACCCATGATACGACGTCGTCGCCTACCTTACGAGAATTCGTGGATAATAAGGTTTCTAATAATAGTAAACCTGCGAAGGAGTCATCATCACCTCTGAGTCGCATGAATTCCCAACAGGGTTATAGTACTTCTATGTTACCCTCTCGGAGTACTGTAACTTCAGCTATGATGTTGGGTTCTATGGGAAAGAATCAGAGTGCCAAAAGCTTTGATTCCAATCTTCTCAGGCAAAGTAGCTTCCCTGCTGGCCATTTCTCTAACAACATCTCCTTTCAGAACGGGTATGATACTATGAAAGGTGTTGGAAACTATAGTGGGGTCAATGGCAATGATGGTGAACTTAGTCTATCTATGAACAGAATGAAGAATCAAATAAGCTTCTCATCAATAAGTCCTTCTTCTTCCTTGGGAGTGCTATCACCAACTTCCAAAATAGGCACGGAGGGTATTAGGGTAACTAGCACTGAGGATGGGAGGCAGGGAGGGAGCAATGGTGATGCTCGATATTTTGGCCCTGGATTCTCCTATGCTTCTTGGAATGAGCCTTCACACCACAAAAGACAGCGAAGTAGTAATGATGAGTTACTTTCTGATTCTCAGGATGGAGAACTAGGAAATCAAGTTCAAACACTTTCGCATCATTTGAGTTTGCCAAGAACGTCGTCGGATATGTTTGCTATGGATAGTTTGCTTCAGTTTTCAGATTCTGTTCCTTGTAAAATCAGAGCTAAGAGAGGCTTTGCTACACATCCTCGAAGCATTGCCGAAAGGGTGAGAAGAAGTCGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAAACATGGACAAGCAAACTAGCACAGCAGAGATGTTGGACTTGGCTGTAGACTACATAAAAGATCTTCAGAAAGAATTCAAGACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCAGAAGCAGATCAAGTTGCTTGA 1152 0.4332 MDSNSRYQVQQQHQHNSGLLRFRSAPPANLKQQGEAANNNGSAWEGSEPLLRFLNSGDTHDTTSSPTLREFVDNKVSNNSKPAKESSSPLSRMNSQQGYSTSMLPSRSTVTSAMMLGSMGKNQSAKSFDSNLLRQSSFPAGHFSNNISFQNGYDTMKGVGNYSGVNGNDGELSLSMNRMKNQISFSSISPSSSLGVLSPTSKIGTEGIRVTSTEDGRQGGSNGDARYFGPGFSYASWNEPSHHKRQRSSNDELLSDSQDGELGNQVQTLSHHLSLPRTSSDMFAMDSLLQFSDSVPCKIRAKRGFATHPRSIAERVRRSRISERIRKLQELVPNMDKQTSTAEMLDLAVDYIKDLQKEFKTLNDKRAKCKCINMQKSEADQVA 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01359 383 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 11 375 - -
Gma19g01359 383 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 305 355 IPR011598 GO:0046983
Gma19g01359 383 MobiDBLite consensus disorder prediction 238 259 - -
Gma19g01359 383 PANTHER TRANSCRIPTION FACTOR BHLH130 11 375 - -
Gma19g01359 383 Gene3D - 307 379 IPR036638 GO:0046983
Gma19g01359 383 MobiDBLite consensus disorder prediction 205 225 - -
Gma19g01359 383 MobiDBLite consensus disorder prediction 1 19 - -
Gma19g01359 383 Pfam Helix-loop-helix DNA-binding domain 311 356 IPR011598 GO:0046983
Gma19g01359 383 SMART finulus 311 361 IPR011598 GO:0046983
Gma19g01359 383 MobiDBLite consensus disorder prediction 1 105 - -
Gma19g01359 383 MobiDBLite consensus disorder prediction 56 105 - -
Gma19g01359 383 MobiDBLite consensus disorder prediction 31 45 - -
Gma19g01359 383 MobiDBLite consensus disorder prediction 240 254 - -
Gma19g01359 383 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 308 371 IPR036638 GO:0046983
Gma19g01359 383 MobiDBLite consensus disorder prediction 205 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01359 Gma-Chr19 42912228 42915776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01359 1 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 40.409 6.40e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma19g01359 HLH 6.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01359 - - gmx:100796534 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01359 19 42912228 42915776 Gma19g01359 19 42912228 42915776 ECH
Gma19g01359 19 42912228 42915776 Gma11g01191 11 10138137 10142740 ECH
Gma19g01359 19 42912228 42915776 Gma12g00492 12 4087312 4092196 ECH
Gma19g01359 19 42912228 42915776 Gma13g03052 13 44886022 44889226 ECH
Gma19g01359 19 42912228 42915776 Gma15g00309 15 2686442 2689889 ECH
Gma19g01359 19 42912228 42915776 Gma03g01302 03 39201065 39204811 GST