Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01349 ATGGAGCCTCATGATGAGACTGGATGCCAGGCTCCTGAACGCCCCATTCTTTGCATTAATAATTGTGGCTTCTTTGGAAGAGCAGCTACCATGAACATGTGTTCCAAGTGTTACAAGGACATGCTGTTGAAGCAGGAGCAGGACAAATTTGCAGCATCATCCGTTGAAAACATTGTGAATGGCAGTTCCAATGGCAATGGAAAGCAGGCTGTGGCTACTGGTGCTGTTGCTGTACAAGTTGAAGCTGTGGAGGTCAAGATTGTCTGTGCTCAGAGTTCTGTGGATTCGTCCTCCGGTGATAGTTTGGAGATGAAAGCCAAGACTGGTCCCAGTAGATGTGCTACATGCCGGAAACGTGTTGGTTTAACTGGTTTCAGCTGCAAATGTGGCAACCTCTTCTGTGCAATGCATCGCTATTCTGATAAACATGATTGCCCTTTTGATTATAGGACTGTTGGTCAGGATGCCATAGCTAAAGCCAACCCCATAATTAAGGCAGATAAGCTCGACAAAATCTAG 519 0.4605 MEPHDETGCQAPERPILCINNCGFFGRAATMNMCSKCYKDMLLKQEQDKFAASSVENIVNGSSNGNGKQAVATGAVAVQVEAVEVKIVCAQSSVDSSSGDSLEMKAKTGPSRCATCRKRVGLTGFSCKCGNLFCAMHRYSDKHDCPFDYRTVGQDAIAKANPIIKADKLDKI 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01349 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Gma19g01349 172 Gene3D - 3 63 - -
Gma19g01349 172 Gene3D - 88 168 IPR035896 -
Gma19g01349 172 SUPERFAMILY AN1-like Zinc finger 104 167 IPR035896 -
Gma19g01349 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 55 - -
Gma19g01349 172 Pfam AN1-like Zinc finger 113 149 IPR000058 GO:0008270
Gma19g01349 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
Gma19g01349 172 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Gma19g01349 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 172 - -
Gma19g01349 172 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Gma19g01349 172 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 8 1 172 - -
Gma19g01349 172 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01349 Gma-Chr19 42787844 42790454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01349 5 172 C2H2 Transcription Factor Family AT3G52800 42.012 1.10e-40 133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01349 19 42787844 42790454 Gma19g01349 19 42787844 42790454 ECH
Gma19g01349 19 42787844 42790454 Gma11g01199 11 10246538 10246975 ECH
Gma19g01349 19 42787844 42790454 Gma12g00501 12 4191705 4195580 ECH
Gma19g01349 19 42787844 42790454 Gma13g03046 13 44833648 44834046 ECH
Gma19g01349 19 42787844 42790454 Gma15g00316 15 2730997 2733338 ECH