Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01347 ATGGCGCAGAAGAAGAAAGCTAGGGTTTCCGACGACGAGGAAATGGAAGTGCAACATGATCAAACCAGCCTTTACCAGGTTCTTGGCGTGGAGAGAACGGCGTCTCAGCAGGAAATAAAGAAGGCGTACTACAAGTTGGCGTTGCGGCTTCACCCCGATAAGAACCCTGGTGATGATGAGGAAGCTAAGGAGAAATTCCAGCAACTGCAAAAAGTGATATCGATTCTCGGGGATGAAGAGAAGCGAGCTCTCTATGATCAGACTGGTTGTGTTGATGATGCTGACCTTGCTGGAGATGTTGTTCAGAATCTTCAAGAGTTCTTTAGAACAATGTACAAGAAGGTGACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATCGGGGATCTGACTCAGAGAAAAATGATTTGATTGATTTGTACAAGAAGTGCAAGGGTAACATGAATAGGCTTTTTTGTTCAATGCTTTGTTCAGATCCTAAACTTGATTCACACCGATTCAAGGATATTCTCGATGAGGCTATAGCTTCAGGAGAACTAAAGGCAAAAAAAGCCTACCAGAAATGGGCTAAGGAAGTATCTGAAATCAAACCGCCCACAAATCCTTTGAGGAGGAGGGAAAAGTCAAATAAGCAGTCAGAGACAGATCTATGTGCAATCATAGCACAACGCCGAAATGAGAGAAAAGGGCAGTTTGATTTAATGTTCTCATCTCTAGTTTCAAAATATGGTGGTGGTGATACGCCAGAACCCTCTGAAGAGGAGTTTGAAGCTACACGGAGAAAGCTGGAGACTGGTAGATCCTCTAAAAACTCGAAGCAATCAAAGCGAAAGTAA 837 0.4325 MAQKKKARVSDDEEMEVQHDQTSLYQVLGVERTASQQEIKKAYYKLALRLHPDKNPGDDEEAKEKFQQLQKVISILGDEEKRALYDQTGCVDDADLAGDVVQNLQEFFRTMYKKVTEADIEEFEANYRGSDSEKNDLIDLYKKCKGNMNRLFCSMLCSDPKLDSHRFKDILDEAIASGELKAKKAYQKWAKEVSEIKPPTNPLRRREKSNKQSETDLCAIIAQRRNERKGQFDLMFSSLVSKYGGGDTPEPSEEEFEATRRKLETGRSSKNSKQSKRK 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01347 278 Gene3D DnaJ domain 7 102 IPR036869 -
Gma19g01347 278 PRINTS DnaJ domain signature 25 43 IPR001623 -
Gma19g01347 278 PRINTS DnaJ domain signature 43 58 IPR001623 -
Gma19g01347 278 PRINTS DnaJ domain signature 61 81 IPR001623 -
Gma19g01347 278 PRINTS DnaJ domain signature 81 100 IPR001623 -
Gma19g01347 278 SUPERFAMILY Chaperone J-domain 19 97 IPR036869 -
Gma19g01347 278 MobiDBLite consensus disorder prediction 253 271 - -
Gma19g01347 278 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 3 274 - -
Gma19g01347 278 MobiDBLite consensus disorder prediction 196 215 - -
Gma19g01347 278 SMART dnaj_3 22 81 IPR001623 -
Gma19g01347 278 MobiDBLite consensus disorder prediction 198 213 - -
Gma19g01347 278 CDD DnaJ 25 78 IPR001623 -
Gma19g01347 278 Pfam DnaJ domain 24 86 IPR001623 -
Gma19g01347 278 ProSiteProfiles dnaJ domain profile. 23 89 IPR001623 -
Gma19g01347 278 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 3 274 IPR042977 -
Gma19g01347 278 MobiDBLite consensus disorder prediction 243 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01347 Gma-Chr19 42771385 42774183 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01347 25 86 C2H2 Transcription Factor Family AT1G74250 42.424 8.61e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01347 K09529 - gmx:100793909 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01347 19 42771385 42774183 Gma19g01347 19 42771385 42774183 ECH
Gma19g01347 19 42771385 42774183 Gma02g01684 02 35832559 35835671 PCT
Gma02g01684 02 35832559 35835671 Gma19g01347 19 42771385 42774183 PCT