Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01346 ATGGAGACAGAGAACGGTGACACCAGGTCCAAAAAGATGGAAGAGTATGAAGTCATAGAGCAAATTGGAAGAGGAGCTTTTGGCTCTGCCTTCCTCGTTCTTCACAAGTCCGAGAAAAAGAGGTATGTGCTGAAAAAGATTAGGTTGGCCAAACAGACAGAGAAGTTCAAACGTACAGCACACCAAGAGATGAACCTGATTGCAAAACTGAATAACCCATATATTGTGGACTACAAAGATGCTTGGGTGGAGAAGGAGGACCACATATGCATTATAACCGGCTATTGTGAAGGAGGTGACATGGCAGAGAACATAAAGAAAGCCCGAGGGTCATTTTTTCCTGAGGAGAAGGTCTGCAAATGGCTGACTCAGTTGTTGATAGCTGTGGACTACTTGCATTCCAATCGTGTGATCCACAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGACAACAACATTCGGCTTGGTGACTTTGGTCTTGCAAAGCGACTTAATGCAGAAGACCTTGCTTCCTCGGTTGTTGGAACTCCAAATTACATGTGTCCTGAGCTCCTCGCTGATATACCTTATGGGTATAAATCTGATATGTGGTCTCTTGGTTGCTGCATGTTTGAGATTGCTGCACATCAACCAGCTTTTCGTGCTCCAGACATGGCTGGACTTATCAATAAAATAAACAGATCCTCCATTTCTCCACTGCCAATTGTTTATTCTTCCACACTGAAACAACTTATCAAGAGCATGCTTAGGAAAAACCCAGAACATAGGCCAACCGCAGCTGAATTGTTAAGGCATCCGCTTTTACAACCTTATGTTCTACGCTGTCATAATGCATCATCTAATGTTCTTCCTGTATATCCCCTAGTTAATCCAAAGGATAAAGCAAGAAGACCTAATAAATCTAGTGGTGGCAAGGACCATAAGGACAAAGAAGCAGGTTTAGTAAATTGTTTGGAACGGATTCATCCAATTGAGGGAAATGCAGATATACAGATAAGCAATCTTCCTAATGATGTGGTAACAATTTCAACCAGTGCAGAAGACAATCTTGAGACCAGGATGGCTAATCTTACCAGCTACATAGTTGAATCTTCTACTAGTATTAGTGGCTCAAAAGATGGGTCAACAACATCTGAATCAACTATTTGCAGTGTGTGCAAGGAGGACTTTAAAAGTAGACCTGCAAGGGAAATGACTAACAATGAGATCTCTTCAAAGAGTACACAAGATTCTCTGCATGAAGAACAAAGATTTGCTGCTAAACATTTTCATAAATTAGAAGACGACGACATAAATGCGGTGACTGCAGAAGTTGAAGATGCTTCTTGCAATGGAGGTTTGGATAATGCTGAAGCACAGAGGGAAGATTCAAACCTTGAGGACTCTGGTAAATCAACAATGTCCAGTGAAGGCAGTAGCAGCACTGATAAAGATAAGTCCATCAATGAGGAAAGGTCATCACTTATTGTACATCCTATTAGGGTTGAAAATGACACTGAATCTGGAAACCGCTTGAAGAAAAGTGAAAACCCTGATGTATATACAGAGGTCCCTCATATGAACTGCTTAATGTCTGTTAGTAATGATGCACTTCCAGTTAAGGATGATGACATAGCAAACGGACACATTCTTTGCTCCACGCATAAAGATGATAATGTAGTGGAGGTTGATCAGGCACCGAGTGGCATTTCATTGAGTGTAATAACTGAAGTAGATGGTGATGAAACAATCAAGACTCCGTTGGATAGTCCCTGCCAGCAAAGAGCTGATGCTCTGGAATCTCTGCTCGAATTATGTGCTCAGCTACTCAAGCAAGATAAACTCGAAGAGCTTGCTGGGGTGCTAAGACCATTTGGGAAAGAAGCTGTCTCATCAAGAGAAACAGCAATATGGCTAGCAAAAAGCCTCATATCTTCCCAAAAGTTTAATCCTGAAACCTAA 1947 0.4155 METENGDTRSKKMEEYEVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVDYKDAWVEKEDHICIITGYCEGGDMAENIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNAEDLASSVVGTPNYMCPELLADIPYGYKSDMWSLGCCMFEIAAHQPAFRAPDMAGLINKINRSSISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCHNASSNVLPVYPLVNPKDKARRPNKSSGGKDHKDKEAGLVNCLERIHPIEGNADIQISNLPNDVVTISTSAEDNLETRMANLTSYIVESSTSISGSKDGSTTSESTICSVCKEDFKSRPAREMTNNEISSKSTQDSLHEEQRFAAKHFHKLEDDDINAVTAEVEDASCNGGLDNAEAQREDSNLEDSGKSTMSSEGSSSTDKDKSINEERSSLIVHPIRVENDTESGNRLKKSENPDVYTEVPHMNCLMSVSNDALPVKDDDIANGHILCSTHKDDNVVEVDQAPSGISLSVITEVDGDETIKTPLDSPCQQRADALESLLELCAQLLKQDKLEELAGVLRPFGKEAVSSRETAIWLAKSLISSQKFNPET 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01346 648 MobiDBLite consensus disorder prediction 291 313 - -
Gma19g01346 648 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Gma19g01346 648 ProSiteProfiles Protein kinase domain profile. 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma19g01346 648 MobiDBLite consensus disorder prediction 445 490 - -
Gma19g01346 648 Pfam Protein kinase domain 16 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma19g01346 648 Gene3D Transferase(Phosphotransferase) domain 1 98 314 - -
Gma19g01346 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Gma19g01346 648 SMART serkin_6 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma19g01346 648 CDD STKc_Nek 16 270 - -
Gma19g01346 648 MobiDBLite consensus disorder prediction 396 417 - -
Gma19g01346 648 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
Gma19g01346 648 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 490 631 - -
Gma19g01346 648 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 10 485 - -
Gma19g01346 648 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 490 631 - -
Gma19g01346 648 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 10 485 - -
Gma19g01346 648 SUPERFAMILY Protein kinase-like (PK-like) 13 293 IPR011009 -
Gma19g01346 648 MobiDBLite consensus disorder prediction 295 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01346 Gma-Chr19 42762181 42768568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01346 9 271 MAP Kinase Kinase Kinase AT3G13530 32.453 2.51e-37 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gma19g01346 Pkinase 4.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01346 K08857 - gmx:100793379 1266.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01346 19 42762181 42768568 Gma19g01346 19 42762181 42768568 ECH
Gma19g01346 19 42762181 42768568 Gma03g01293 03 39054485 39059232 GST
Gma19g01346 19 42762181 42768568 Gma02g01686 02 35849335 35857810 PCT
Gma02g01686 02 35849335 35857810 Gma19g01346 19 42762181 42768568 PCT