Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01345 ATGGCTGACCCCTACTCCAATTTCTTCTCTTCTTCCTCACCCTTCTTCCGTTTCAACCACAACCAATATTTCCCTTCTTCAAACCCTTCTCCACAACACCACCGCAACTTCATCAACCACACCAAAACCAACGACACCACCCCCACCTTTTTCCACTACCACCAAACTACTACTACTTTTTCTTCTTTGCCACCTTCACCTCCTTTGAGAGAAGAACTACCCCTCTTGAGGCTGAGTCCTACAAAGCAAGAGGAGGAGGAAGAGGACCTGTCTAATTGCACTGGAGCAGCCATGGATGTGGAAGAGAGGATCCACCTTAAAGAGGAAGAAGATGATGAAGATGGCACTACTAATGTCACTGTTGCACTCCACATAGGTTTGCCAAGCCCTAGTGCTGCTGAGATGGCTTCTGTCCTCTCTTCTTCCTCTGAGATCACTGACAAAGACCAACATGGAGATGGTGCTGCTGAGGATCATTCTTCTGCTGGCGGCTTCAGACTCAACAAGGGTCAGTACTGGATCCCTACCCCTTCCCAGATTCTCATTGGTCCTACCCAGTTCTCTTGCCCTGTTTGCTGCAAAACTTTCAATAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGACCTGAATCTCTGAGGGGAACCCAACCAACAGGCATGTTGAGGCTTCCTTGCTATTGTTGTGCCCCAGGGTGCAGAAACAACATTGACCATCCAAGAGCAAAGCCTCTCAAAGACTTTAGAACACTCCAAACGCATTACAAGAGGAAGCATGGGATCAAGCCCTTCATGTGCAGGAAATGCGGCAAGGCCTTTGCTGTGAGGGGAGATTGGAGAACTCATGAGAAGAACTGTGGCAAGCTTTGGTACTGTATTTGTGGGTCCGATTTCAAGCACAAGAGGTCCCTTAAAGACCACATTAAAGCCTTTGGGAGTGGCCATGCAGCTTATGGCATCGATGGATTCGAAGAAGAAGATGAGCCAGCTTCCGAAGTAGAGCAAGATAATGATGATTCCACCCAGTGA 1050 0.48 MADPYSNFFSSSSPFFRFNHNQYFPSSNPSPQHHRNFINHTKTNDTTPTFFHYHQTTTTFSSLPPSPPLREELPLLRLSPTKQEEEEEDLSNCTGAAMDVEERIHLKEEEDDEDGTTNVTVALHIGLPSPSAAEMASVLSSSSEITDKDQHGDGAAEDHSSAGGFRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDDSTQ 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01345 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 187 214 IPR013087 -
Gma19g01345 349 SMART c2h2final6 271 291 IPR013087 -
Gma19g01345 349 SMART c2h2final6 187 209 IPR013087 -
Gma19g01345 349 Gene3D Classic Zinc Finger 186 209 - -
Gma19g01345 349 ProSitePatterns Zinc finger C2H2 type domain signature. 189 209 IPR013087 -
Gma19g01345 349 SUPERFAMILY beta-beta-alpha zinc fingers 253 291 IPR036236 -
Gma19g01345 349 PANTHER ZINC FINGER PROTEIN WIP2 1 348 IPR043584 GO:0003700|GO:0010468
Gma19g01345 349 MobiDBLite consensus disorder prediction 141 163 - -
Gma19g01345 349 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 348 - -
Gma19g01345 349 Gene3D Classic Zinc Finger 249 324 - -
Gma19g01345 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 271 291 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01345 Gma-Chr19 42731793 42734337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01345 1 346 C2H2 Transcription Factor Family AT3G57670 60.417 1.59e-146 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma19g01345 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01345 - - gmx:100802907 694.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01345 19 42731793 42734337 Gma19g01345 19 42731793 42734337 ECH
Gma19g01345 19 42731793 42734337 Gma13g03043 13 44817029 44819284 ECH
Gma19g01345 19 42731793 42734337 Gma15g00318 15 2744930 2747071 ECH
Gma19g01345 19 42731793 42734337 Gma03g01291 03 39021640 39024510 GST
Gma19g01345 19 42731793 42734337 Gma02g01696 02 36133987 36136293 PCT
Gma02g01696 02 36133987 36136293 Gma19g01345 19 42731793 42734337 PCT