Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01340 ATGGCAACGGGAACGGGAAGTAAGAAGAAGCCATCACCTCTCTCTTTGGAGCAATTCATCTCAATTACCGCTCCTCTTCTTGATTTGGAAAAGGAAGCTGAGATTTCAAGCTCAATCGCCACTGGCGCGTCCCGGAATTTGGATACTGCTCAAAAGAGGGGTTCCACAATCCTCAACTTGAAGTGTGTCGATGTCCAGACAGGGCTTATGGGGAAGTCTCTGATCGAGTTCCAGTCAACAAAAGGAGATGTTCTTCCTGCACACAAGTTTGGTACTCATGATGTTGTTGTTTTAAAACTCAACAAGGCTGATTTAGGTTCTCCTGCTCTTGGACAAGGTGTTGTTTACAGATTAAAGGACTCATCAATAACTGTTGCTTTCGATGATATACCAGAAGATGGTTTAAACAGTCCCCTAAGACTGGAAAAAGTAGCAAATGAGGTGACATATCGCAGGATGAAAGACGCATTGATACAGTTGAGTAAAGGAGTGCACAAGGGTCCTGCCTCTGATCTGATTCCTGTCTTGTTTGGGGAGAGGCCACCAGCAGTGTCCAAGAAGGATGTATCCTTCACTCCCTTTAATAAAAATCTTGATCACTCTCAGAAAGAAGCAGTTTCGAAAGCTCTATCATCGAAGAACGTGTTCTTGCTGCATGGACCACCTGGAACAGGAAAAACTACAACAGTTGTAGAAATTATATTACAAGAAGTGAAGCGTGGATCTAAGATTCTTGCTTGTGCTGCCTCAAATATTGCTGTTGACAACATTGTTGAGCGGCTAGTTCCACATAGAGTTAAGCTGGTGAGACTGGGTCATCCTGCACGTTTATTGCCTCAAGTACTGGACAGTGCACTGGATGCTCAGGTACTACGAGGAGATAATAGTGGTCTTGCAAACGACATTCGGAAAGAAATGAAGGCATTGAATGGAAAGCTACTGAAAACCAAAGACAGAAATACGAGAAAGGACATACAAAGGGAACTTAGGACTCTATCCAAAGAAGAACGTAAAAGGCAGCAGCTTGCTGTAACAGATGTACTTAAAAGTGCAGATGTAATATTAACTACTTTGATTGGGGCTTTCTCTAAGAAACTAGACAGCACTTCATTTGATTTGGTGATTATTGATGAAGCTGCTCAAGCACTTGAGATAGCATGCTGGATACCTCTGCTGAAGGGTTCAAGATGTGTACTTGCAGGGGACCATCTTCAACTTCCTCCAACCATTCAAAGTGTTGAAGCCGAGAAGAAAGGCTTAGGAAGAACGCTCTTTGAACGACTTGCAGAAGTGTATGGAGATGAAATCACATCGATGCTTACTGTCCAGTACCGTATGCATGAACTTATCATGGATTGGTCTTCTAAAGAGCTTTACAACAGTAAGATCAAGGCTCATCCTAGTGTTACTGCACATATGTTATATGATCTTGAGGGTGTGAAGCGGACAACTTCAACTGAACCAACCCTCCTTCTCATAGACACAGCTGGATGTGACATGGAAGAAAAGAAAGATGAAGAAGATAGCACCTTTAATGAAGGTGAAGCTGAGGTTACTGTGGCTCATGCAAAGAGACTAGTGCAAAGTGGGGTGATTCCTTCTGATATTGGAATTATTACTCCATATGCTGCCCAGGTTGTTTTACTCAAGATGTTGAAAAACAAGGAGGACCGGCTGAAGGATGTTGAAATCTCAACAGTTGATGGTTTCCAGGGAAGGGAGAAGGAAGCCATTATTATATCAATGGTTCGATCAAATTCAAAAAAAGAGGTTGGCTTTCTGAGTGATCACCGGCGAATGAATGTGGCTGTGACACGGTCCAGAAGGCAATGCTGTCTTGTCAGTGACACAGAGACAGTCAGTGGTGATGGATTTCTAAAGCGATTGATTGAGTATTTTGAGGAGCATGGTGAATATCTGAGTGCATCTGAGTACCAGAATGAGTAG 1947 0.4294 MATGTGSKKKPSPLSLEQFISITAPLLDLEKEAEISSSIATGASRNLDTAQKRGSTILNLKCVDVQTGLMGKSLIEFQSTKGDVLPAHKFGTHDVVVLKLNKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALIQLSKGVHKGPASDLIPVLFGERPPAVSKKDVSFTPFNKNLDHSQKEAVSKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRLGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKALNGKLLKTKDRNTRKDIQRELRTLSKEERKRQQLAVTDVLKSADVILTTLIGAFSKKLDSTSFDLVIIDEAAQALEIACWIPLLKGSRCVLAGDHLQLPPTIQSVEAEKKGLGRTLFERLAEVYGDEITSMLTVQYRMHELIMDWSSKELYNSKIKAHPSVTAHMLYDLEGVKRTTSTEPTLLLIDTAGCDMEEKKDEEDSTFNEGEAEVTVAHAKRLVQSGVIPSDIGIITPYAAQVVLLKMLKNKEDRLKDVEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDHRRMNVAVTRSRRQCCLVSDTETVSGDGFLKRLIEYFEEHGEYLSASEYQNE 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01340 648 Coils Coil 299 319 - -
Gma19g01340 648 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 632 IPR027417 -
Gma19g01340 648 Gene3D - 444 648 IPR027417 -
Gma19g01340 648 Pfam AAA domain 421 617 IPR041679 -
Gma19g01340 648 CDD DEXXQc_SMUBP2 197 445 - -
Gma19g01340 648 CDD SF1_C_Upf1 446 634 IPR041679 -
Gma19g01340 648 SMART AAA_5 212 464 IPR003593 -
Gma19g01340 648 TIGRFAM TIGR00376: putative DNA helicase 345 641 IPR004483 GO:0003677|GO:0005524
Gma19g01340 648 Pfam AAA domain 198 412 IPR041677 GO:0004386
Gma19g01340 648 SMART ultradead3 194 445 IPR014001 -
Gma19g01340 648 PANTHER HELICASE WITH ZINC FINGER 2 12 646 - -
Gma19g01340 648 Gene3D - 25 428 IPR027417 -
Gma19g01340 648 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 12 646 - -
Gma19g01340 648 Gene3D - 42 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01340 Gma-Chr19 42688652 42695070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01340 171 381 Core DNA Replication Machinery Family AT1G08840 26.540 1.47e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01340 K19036 - gsj:114399949 1240.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01340 19 42688652 42695070 Gma19g01340 19 42688652 42695070 ECH
Gma19g01340 19 42688652 42695070 Gma03g01285 03 38938017 38944619 GST