Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01339 ATGGATACTTGCAAGAAGTCCCCTTTGAAGCCATGGAAGAAAGGGCCAACAAGGGGGAAAGGCGGGCCCCAGAACGCCTCCTGCGAGTACCGAGGCGTTCGGCAGCGAACTTGGGGCAAATGGGTTGCTGAGATAAGAGAGCCAAAGAAGAGAACCAGGCTCTGGCTTGGTTCTTTTGCCACAGCTGAAGAAGCTGCCATGGCTTATGATGAGGCTGCTAGGAGACTCTATGGTCCAGATGCATACCTTAATCTCCCCCACCTGCAACCCAGGTCCACTTCAACTATCACGTCAGGAAAGTTCAAATGGTTCCCTTCCAAGAACTTCATTTCAATGTTTCCTTCCTGTGGATTACTCAATGTAAATGCTCAACCTAGTGTTCATTTAATCCATCAGAGGCTGCAAGAGCTTAAGCGAAATTCAGTTGTGAGTCAATCCTCATCTAGTTCATCCAATGATCCAAAGGCAGAAATTCAGAATGTAGACAGCAAAAATCACGGAGAAGATGAAAATCCTCCAAAAGATGTTCAAACATCATCAGAGGAGGTGCTTGGAGATCTTCAGGAGAAACCCCAGATAGACCTCCATGAGTTTCTTCAACAGATGGGAATACTTAAAGAAGAAAGACAGTCAGAAAGAACTGATAGCTCAGGAAGTTCAACAGTGCGTGAAGCTGTGTTGACAGATGACTGTGATCATTTGGGAGTGTTTTCTGACAAGAGTGTTAACTGGGAGGCATTGATTGAGATGCATGGACTTGCAGGTATTCAGGAATCAGAAGTCACTCAGCTTGAAGCATATGAGCCAAATGATGATCTAACTTTCTCAACTTCCATTTGGAACTTTTAA 849 0.4499 MDTCKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLQPRSTSTITSGKFKWFPSKNFISMFPSCGLLNVNAQPSVHLIHQRLQELKRNSVVSQSSSSSSNDPKAEIQNVDSKNHGEDENPPKDVQTSSEEVLGDLQEKPQIDLHEFLQQMGILKEERQSERTDSSGSSTVREAVLTDDCDHLGVFSDKSVNWEALIEMHGLAGIQESEVTQLEAYEPNDDLTFSTSIWNF 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01339 282 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Gma19g01339 282 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Gma19g01339 282 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Gma19g01339 282 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Gma19g01339 282 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Gma19g01339 282 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Gma19g01339 282 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 1 279 - -
Gma19g01339 282 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Gma19g01339 282 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F 1 279 - -
Gma19g01339 282 MobiDBLite consensus disorder prediction 140 182 - -
Gma19g01339 282 MobiDBLite consensus disorder prediction 159 176 - -
Gma19g01339 282 MobiDBLite consensus disorder prediction 1 27 - -
Gma19g01339 282 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Gma19g01339 282 MobiDBLite consensus disorder prediction 140 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01339 Gma-Chr19 42686031 42686879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01339 5 282 AP2-EREBP Transcription Factor Family AT3G57600 52.650 1.59e-87 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma19g01339 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01339 - - gmx:100801311 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01339 19 42686031 42686879 Gma19g01339 19 42686031 42686879 ECH
Gma19g01339 19 42686031 42686879 Gma03g01284 03 38935826 38936680 GST
Gma19g01339 19 42686031 42686879 Gma02g01701 02 36290389 36291425 PCT
Gma02g01701 02 36290389 36291425 Gma19g01339 19 42686031 42686879 PCT