Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01328 ATGGGAAACTGCTGCGCCACGCCGTCCACGGACGAAACGGCGAACAAGAAGGGCAAAAAGGGAAAAAAGGAAAACCCCTTCGCGATCGATTACGGTTTTAACGCCGCCGCCGCCGCCAACGGGTCGAAGCTCACCGTTCTGAAGTCCCCGACGGGCCGCGAGATCGAGGCCCGCTACGAGCTGGGCCGCGAGCTGGGTCGCGGTGAGTTCGGGATAACCTACCTCTGTACGGACAAGGAGACGGGGGAGGAGCTGGCCTGCAAGTCGATCTCGAAGAAGAAGCTTCGGACGGCGATAGACATCGACGACGTGAGGAGGGAGGTGGAGATCATGCGCCACTTGCCGCAGCATCCGAACATCGTGACCTTGAAGGATACCTACGAGGACGACAATGCCGTGCATCTCGTCATGGAGCTCTGCGAGGGTGGGGAGCTCTTCGACCGCATCGTGGCCCGAGGCCACTACACCGAACGCGCCGCCGCCGCCGTCACCAAGACCATCGTCGAAGTCGTTCAGATGTGCCACAAACAAggtgtgatgcatagggatctcaagccggagaactttttgtttgcaaataaaaaggaaaccgcagctctgaaggctatagattttgggttgtcggtgttctttaaaccaggtaGGGAAAGATTTAATGAGATAGTTGGAAGTCCATATTACATGGCTCCTGAGGTATTGAAGAGAAATTATGGGCCAGAAGTGGACATCTGGAGTGCTGGAGTAATTCTATACATCTTACTTTGTGGTGTTCCGCCATTTTGGGCAGAAACTGAGCAAGGAGTTGCACAAGCAATCATACGATCTGTTGTTGATTTCAAAAGGGATCCATGGCCAAAAGTTTCTGATAATGCAAAAGACCTTGTGAAGAAGATGCTAGATCCTGACCCGAGGCGGCGGCTTACTGCACAAGAAGTGTTAGATCATCCATGGTTACAAAATGCAAAGAAAGCTCCTAATGTTTCCTTAGGAGAAACTGTTAGAGCAAGGCTCaagcaattttctgtaatgaacaagcttaagaaaagagctttaaggGTGATTGCTGAGCATTTGACAGTAGAAGAAGCTGCTGGGCTAAAAGAGGGATTCCAGCTTATGGATACAAACAACAGAGGCAAGATTAACATTGATGAATTACGAGTAGGGTTGCATAAACTTGGTCATCAAGTTCCCGAATCAGATGTCCAAGCTCTTATGGAAGCTGGTGATGTAGATGGGGATGGGCACCTAGATTATGGAGAGTTTGTAGCCATTTCTGTTCATCTAAGAAAGATGGGAAATGATGAGCATCTTCGCAAAGCCTTCCAATTTTTTGATCAGAACAAAAGTGAGTATATTGAGATTGAGGAGCTGCGTAGCGCCTTATCTGATGATCTTGACACAAACAGTGAAGAAGTTATCAGTGCAATTATGCATGATGTGGACACAGACAAGGATGGAAGGATAAGTTACGACGAATTTGCTACAATGATGAAGGCTGGCACAGATTGGAGAAAAGCATCAAGGCAGTATTCGCGAGAGAGGTTTGCCAGTCTGAGCCTAACGTTGATGAGGGACGGGTCATTGCATTTAAACAATGAAAAACAATAA 1611 0.4432 MGNCCATPSTDETANKKGKKGKKENPFAIDYGFNAAAAANGSKLTVLKSPTGREIEARYELGRELGRGEFGITYLCTDKETGEELACKSISKKKLRTAIDIDDVRREVEIMRHLPQHPNIVTLKDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTKTIVEVVQMCHKQGVMHRDLKPENFLFANKKETAALKAIDFGLSVFFKPGRERFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVVDFKRDPWPKVSDNAKDLVKKMLDPDPRRRLTAQEVLDHPWLQNAKKAPNVSLGETVRARLKQFSVMNKLKKRALRVIAEHLTVEEAAGLKEGFQLMDTNNRGKINIDELRVGLHKLGHQVPESDVQALMEAGDVDGDGHLDYGEFVAISVHLRKMGNDEHLRKAFQFFDQNKSEYIEIEELRSALSDDLDTNSEEVISAIMHDVDTDKDGRISYDEFATMMKAGTDWRKASRQYSRERFASLSLTLMRDGSLHLNNEKQ 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01328 536 ProSiteProfiles EF-hand calcium-binding domain profile. 397 432 IPR002048 GO:0005509
Gma19g01328 536 ProSitePatterns EF-hand calcium-binding domain. 482 494 IPR018247 -
Gma19g01328 536 Gene3D Transferase(Phosphotransferase) domain 1 145 326 - -
Gma19g01328 536 SMART efh_1 365 393 IPR002048 GO:0005509
Gma19g01328 536 SMART efh_1 401 429 IPR002048 GO:0005509
Gma19g01328 536 SMART efh_1 473 501 IPR002048 GO:0005509
Gma19g01328 536 SMART efh_1 437 465 IPR002048 GO:0005509
Gma19g01328 536 Pfam Protein kinase domain 59 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma19g01328 536 MobiDBLite consensus disorder prediction 1 22 - -
Gma19g01328 536 SUPERFAMILY Protein kinase-like (PK-like) 58 327 IPR011009 -
Gma19g01328 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Gma19g01328 536 ProSiteProfiles EF-hand calcium-binding domain profile. 361 396 IPR002048 GO:0005509
Gma19g01328 536 ProSiteProfiles EF-hand calcium-binding domain profile. 469 504 IPR002048 GO:0005509
Gma19g01328 536 ProSitePatterns EF-hand calcium-binding domain. 410 422 IPR018247 -
Gma19g01328 536 Gene3D - 327 501 - -
Gma19g01328 536 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 32-LIKE 15 515 - -
Gma19g01328 536 Pfam EF-hand domain pair 366 425 IPR002048 GO:0005509
Gma19g01328 536 Pfam EF-hand domain pair 436 499 IPR002048 GO:0005509
Gma19g01328 536 Gene3D Phosphorylase Kinase; domain 1 61 144 - -
Gma19g01328 536 SUPERFAMILY EF-hand 347 524 IPR011992 -
Gma19g01328 536 ProSiteProfiles Protein kinase domain profile. 59 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma19g01328 536 PANTHER SERINE/THREONINE-PROTEIN KINASE 15 515 - -
Gma19g01328 536 SMART serkin_6 59 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma19g01328 536 ProSitePatterns Protein kinases ATP-binding region signature. 65 88 IPR017441 GO:0005524
Gma19g01328 536 CDD STKc_CAMK 58 317 - -
Gma19g01328 536 ProSiteProfiles EF-hand calcium-binding domain profile. 433 468 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01328 Gma-Chr19 42576447 42580581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01328 1 534 EF-hand Containing Proteins AT5G19450 78.318 0.0 891
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gma19g01328 Pkinase 6.2e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01328 K13412 - gmx:100790745 1054.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01328 19 42576447 42580581 Gma19g01328 19 42576447 42580581 ECH
Gma19g01328 19 42576447 42580581 Gma03g01277 03 38847865 38852570 GST
Gma19g01328 19 42576447 42580581 Gma02g01715 02 36611255 36618786 PCT
Gma02g01715 02 36611255 36618786 Gma19g01328 19 42576447 42580581 PCT