Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01323 ATGGGGACTCCGGAATTTCCTCATCTCGGCAAGCATTGCTCTGTTTCTTATTGCAAGCAGCTTGATTTCTTGCCCTTCACATGCGATCGCTGCAATCAGGTATATTGTTTGTTGCATCGAGGTTATATTAAACATAAGTGCACAAAGGCCAACAAACAAGATGTCACAGTTGCCATATGTCCTCTCTGTGCCAAAGGAGTTCGCCTCATTCCAGATCAAGACCCTAACATAACATGGGACAACCATGTTAACGTTGATTGCGACCCATCAAATTACGAGAAAGTCACAGAGAAGAGAAAATGCCCTGCCCCCGGATGCAAAGAGGTCTTGGTATTCTCCAACACAATCAAGTGCAGGGACTGCCTGAAAGACCATTGCTTGAAGCACCGGTTCGGCCCCGATCACAAATGTTCTGGTCCCCAAAAGTTGGAGACAAGTTTTTCATTCATGGGTCTTTTGAATAGGAGTAGAAAAGAGGGGCCAAAGCCCAATTTAGCTTCAACAACATCATCTAAGTGGAGTTCAAGCTTTCTCAACGTGGCCTCTAATATTCGCGCCTCAGCTGAAACGGGCATGTCGAAATTGAGCGATGAAATTAACCAAGTTTGGCAGGCAGCTACTACTAGAGATGGGATGGGGCAGAGCAGTGGCAGTGGAAATAGAAATGATCACCAAGTGGAGCAATGCCCTCAGTGTAGATCAAAGTTTTCCTCTGTGACTGCTTTGGTGGATCATGTGCAACAGGTTCATGAAAGAAATGGGAACCGATTAGGGGTTAAGAAGATTGATGCATGTCCTAAGTGTAGTAAGGGATTTCTAGACCCTGTGTCCCTTGTGGAGCATGTTGAGAGGGATCATGGAGGTGGTTCTGGAGCGTAG 879 0.4608 MGTPEFPHLGKHCSVSYCKQLDFLPFTCDRCNQVYCLLHRGYIKHKCTKANKQDVTVAICPLCAKGVRLIPDQDPNITWDNHVNVDCDPSNYEKVTEKRKCPAPGCKEVLVFSNTIKCRDCLKDHCLKHRFGPDHKCSGPQKLETSFSFMGLLNRSRKEGPKPNLASTTSSKWSSSFLNVASNIRASAETGMSKLSDEINQVWQAATTRDGMGQSSGSGNRNDHQVEQCPQCRSKFSSVTALVDHVQQVHERNGNRLGVKKIDACPKCSKGFLDPVSLVEHVERDHGGGSGA 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01323 292 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 290 - -
Gma19g01323 292 Gene3D Classic Zinc Finger 194 288 - -
Gma19g01323 292 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Gma19g01323 292 ProSitePatterns Zinc finger C2H2 type domain signature. 229 250 IPR013087 -
Gma19g01323 292 Gene3D - 81 148 IPR035896 -
Gma19g01323 292 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 290 - -
Gma19g01323 292 ProSitePatterns Zinc finger C2H2 type domain signature. 265 286 IPR013087 -
Gma19g01323 292 SMART c2h2final6 227 250 IPR013087 -
Gma19g01323 292 SMART c2h2final6 263 286 IPR013087 -
Gma19g01323 292 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Gma19g01323 292 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Gma19g01323 292 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Gma19g01323 292 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Gma19g01323 292 Gene3D - 2 61 IPR035896 -
Gma19g01323 292 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Gma19g01323 292 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Gma19g01323 292 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01323 Gma-Chr19 42536246 42538260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01323 1 292 C2H2 Transcription Factor Family AT2G41835 58.983 5.22e-115 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma19g01323 zf-AN1 3.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01323 - - gmx:100790226 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01323 19 42536246 42538260 Gma19g01323 19 42536246 42538260 ECH
Gma19g01323 19 42536246 42538260 Gma03g01273 03 38807614 38809486 GST
Gma19g01323 19 42536246 42538260 Gma02g01719 02 36840750 36850261 PCT
Gma02g01719 02 36840750 36850261 Gma19g01323 19 42536246 42538260 PCT