Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01320 ATGGCGACCAAGTTTTTAGCTTTAGCTTGTTTACGTAACAATGAGGGGTCGGGGTACCTATCGCCACGACCTCACTACCCGTCGATGCCGAAATATCCAAAGGGAGTGACAGAAGAAGAAGGAAGCAGTAACGTATCGTCCAAGGCACTTTTCTCCGTCGTCGGAATGACTTGCTCCGCCTGTGCTGCCTCCGTCGAGAAAGCCGTCAAGCGTCTTCCCGGAATTCGCCAAGCCGTCGTTGATGTTCTCAACAACCGTGCCCAAGTCCTCTTCTATCCATCCTTTGTTAACGAAGAGACCATTCGTGAGGTCATTGAAGATGCTGGATTCCAAGCCACATTCATCAGAGATGATAACGAGACATCTGTTCAGATATGCCGCATACGTATCCAAGGCATGACATGCACGTCGTGTTCCTCCACCGTCGAATCCGCTCTACAATCAATCCAAGGAGTGGTGAAAGCCCAAGTGGCTCTTGCAACTGAGGAAGCTGAAGTTCACTACACTCCAAACGTTGTTACCTACAACCAAATCTTGGAAGCTGTTGAAGACACGGGCTTTCAGGCCACGCTTATAAGCACAGGCGAAGACATGAGCAGAATAGACATTCAAGTTGAAGGCATAAGAACTGGTCGTTCCATGAGACTCATTGAAAATTCTCTTCAGGCCCTCCCTGGGGTCCAAGGTGTAGAAACACACCCTGAGTTCAACAAAGTATCTCTTTCTTATAAACCAGACTTGACAGGACCGAGAAATTTCATCAATGTGATCGAAGAAACGGGATCTAGGCGTTTCAAGGCTAAGATTTTCCCTGAAGAAGGAGGAAGAAGGAATAGTCATAGGAGGGAGGAAATAAGGCAATACTATAGATCTTTCTTGTGGAGTTTGGTGCTTACTATTCCTGTGTTTCTAACCTCTATGGTGCTTATGTATATCCCTGGAATTAAGCATGGAGTAGATGCTAAAGTTGTGAACATGCTTACAGTGGGCGAGATTATAAGATGGGTGCTTGCTACACCAGTGCAGTTCATTATAGGGAAGAGGTTTTACTCTGGTGCTTACAAAGCATTACGCCTTGGCTCTCCCAACATGGATGTTTTGATTGCCTTGGGGACAAATGCAGCATACTTTTACTCAGTGTATTCTGTGCTGAGAGCTGCTACATCTCAGGGTTTCAAGGGTACTGATTTCTTTGAGACTAGTGCTATGCTTATTTCGTTTATTTTGCTAGGGAAGTACCTTGAGGTTTTGGCCAAGGGCAAGACGTCCAATGCAATTGCCAAGCTCATGAACTTGACACCTGACACTGCTATACTGTTGACCCTGGACAGTGAAGGAAATGTTGTTGGTGAAGAGGAAATTGATAGCAGGCTGATTCAGAAGAATGATGTGATTAAAGTTATTCCTGGTGCAAAGGTGGCTGCGGATGGATTTGTTATTTGGGGTCAGAGCCACGTGAATGAGAGCATGATTACAGGTGAGGCACGTCCTGTGGCTAAGAGGAAAGGTGAAACTGTTATTGGAGGAACTGTGAATGAGAATGGAGTGTTGCATGTTAAGGCTACCTGGGTTGGATCAGAGAGTGCTCTTTCTCAGATTGTTAGACTTGTTGAGTCAGCACAGATGGCCAAGGCTCCTGTGCAGAAGTTTGCTGACCGCATTTCTAAATACTTTGTGCCTCTGGTAGTTATTTTAATCTCATTTTCAACTTGGCTTGCATGGTTTTTAGCTGGAAGATTTCATGCTTACCCCAAGTCTTGGATACCATCTTCCATGGATAGCTTTCAGCTTGCTTTGCAGTTTGGGATTTCTGTCATGGTCATAGCTTGTCCATGTGCTTTAGGTTTAGCAACGCCAACTGCTGTTATGGTTGGCACTGGAGTAGGTGCATCTCAGGGAATACTTATCAAAGGAGGTCAAGCATTAGAAAATACACATAAGGTGAACTGTGTTGTATTTGACAAAACAGGTACTCTCACAATCGGGAAGCCTGTGGTAGTAAATACAAAGTTGTTGACAAATATGGTACTCCGGGAATTCTATGAACTTGTGGCTGCAGCTGAGGTGAATAGTGAGCATCCACTGGCTAAGGCCATAGTTGAGTATGCCAAAAAACTGAGAGATGATGAGAACCCCATTTGGCCAGAGGCACGGGATTTTGTGTCCATTGCTGGACATGGAGTTAAGGCCATGGTTAGAAACAAGGAAATACTTGTGGGTAACAAGAGCTTGATGGAAGACCACAATGTTGCACTTCCCATCGATGCTGAAGAGATGCTTGCAGAAGCAGAAGCAATGGCTCAAACTGGAATTATAGTGTCTATTAATAGGGAAGTAGTTGGGGTTTTAGCAGTATCTGATCCATTGAAACCAGCTGCACAAGAAGTCATTTCCATTCTCAAGTCTATGAAAATTAGGAGCATCATGGTGACTGGGGACAATTGGGGAACTGCCAATTCTATAGCAAGGGAAGTTGGAATTGAAACAGTTATTGCTGAGGCCAAACCAGATCAGAAAGCAGAGAAAGTCAAGGACTTGCAGGCTTCTGGGTGCAGGGTGGCTATGGTGGGGGATGGTATCAATGACTCACCAGCACTTGTGGCAGCAGATGTAGGAATGGCAATTGGTGCTGGTACAGACATTGCTATTGAGGCTGCTGATATTGTCCTAATGAAGAGCAACTTGGAGGATGTCATAACTGCCATTGATCTTTCCAGAAAAACGTTTTCTCGTATCCGCCTCAACTACATATGGGCTTTGGGCTATAATCTACTTGGCATTCCAATTGCTGCTGGAGCTCTTTTTCCTTCTACACAATTTCGGTTGCCACCATGGATTGCTGGGGCTGCCATGGCTGCATCTTCTGTCAGTGTTGTGTGCTGCTCTCTAATGTTGAAGTATTATAGGAGACCCAAGAAGCTGGACAACCTTGAGATACGAGGCATAAGCATTGAGTGA 2958 0.4517 MATKFLALACLRNNEGSGYLSPRPHYPSMPKYPKGVTEEEGSSNVSSKALFSVVGMTCSACAASVEKAVKRLPGIRQAVVDVLNNRAQVLFYPSFVNEETIREVIEDAGFQATFIRDDNETSVQICRIRIQGMTCTSCSSTVESALQSIQGVVKAQVALATEEAEVHYTPNVVTYNQILEAVEDTGFQATLISTGEDMSRIDIQVEGIRTGRSMRLIENSLQALPGVQGVETHPEFNKVSLSYKPDLTGPRNFINVIEETGSRRFKAKIFPEEGGRRNSHRREEIRQYYRSFLWSLVLTIPVFLTSMVLMYIPGIKHGVDAKVVNMLTVGEIIRWVLATPVQFIIGKRFYSGAYKALRLGSPNMDVLIALGTNAAYFYSVYSVLRAATSQGFKGTDFFETSAMLISFILLGKYLEVLAKGKTSNAIAKLMNLTPDTAILLTLDSEGNVVGEEEIDSRLIQKNDVIKVIPGAKVAADGFVIWGQSHVNESMITGEARPVAKRKGETVIGGTVNENGVLHVKATWVGSESALSQIVRLVESAQMAKAPVQKFADRISKYFVPLVVILISFSTWLAWFLAGRFHAYPKSWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGILIKGGQALENTHKVNCVVFDKTGTLTIGKPVVVNTKLLTNMVLREFYELVAAAEVNSEHPLAKAIVEYAKKLRDDENPIWPEARDFVSIAGHGVKAMVRNKEILVGNKSLMEDHNVALPIDAEEMLAEAEAMAQTGIIVSINREVVGVLAVSDPLKPAAQEVISILKSMKIRSIMVTGDNWGTANSIAREVGIETVIAEAKPDQKAEKVKDLQASGCRVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPSTQFRLPPWIAGAAMAASSVSVVCCSLMLKYYRRPKKLDNLEIRGISIE 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01320 985 SFLD p-type atpase 634 908 IPR044492 -
Gma19g01320 985 TIGRFAM TIGR00003: copper ion binding protein 128 189 IPR006122 GO:0005507
Gma19g01320 985 TIGRFAM TIGR00003: copper ion binding protein 50 112 IPR006122 GO:0005507
Gma19g01320 985 ProSitePatterns Heavy-metal-associated domain. 53 82 IPR017969 GO:0046872
Gma19g01320 985 Gene3D - 46 119 - -
Gma19g01320 985 Gene3D - 124 196 - -
Gma19g01320 985 ProSitePatterns E1-E2 ATPases phosphorylation site. 654 660 IPR018303 -
Gma19g01320 985 ProSiteProfiles Heavy-metal-associated domain profile. 125 191 IPR006121 GO:0046872
Gma19g01320 985 Gene3D - 199 261 - -
Gma19g01320 985 CDD HMA 51 113 IPR006121 GO:0046872
Gma19g01320 985 SFLD C1.7: P-type atpase like 634 908 - -
Gma19g01320 985 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 404 940 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma19g01320 985 SUPERFAMILY HAD-like 651 962 IPR036412 -
Gma19g01320 985 SUPERFAMILY Calcium ATPase, transduction domain A 451 537 IPR008250 -
Gma19g01320 985 SUPERFAMILY HMA, heavy metal-associated domain 195 262 IPR036163 GO:0046872
Gma19g01320 985 PRINTS Copper-transporting ATPase 1 signature 74 97 - -
Gma19g01320 985 PRINTS Copper-transporting ATPase 1 signature 48 73 - -
Gma19g01320 985 PRINTS Copper-transporting ATPase 1 signature 103 123 - -
Gma19g01320 985 PRINTS Copper-transporting ATPase 1 signature 148 169 - -
Gma19g01320 985 Pfam Heavy-metal-associated domain 51 110 IPR006121 GO:0046872
Gma19g01320 985 Pfam Heavy-metal-associated domain 128 187 IPR006121 GO:0046872
Gma19g01320 985 Gene3D - 619 913 IPR023214 -
Gma19g01320 985 PRINTS P-type cation-transporting ATPase superfamily signature 803 813 - -
Gma19g01320 985 PRINTS P-type cation-transporting ATPase superfamily signature 487 501 - -
Gma19g01320 985 PRINTS P-type cation-transporting ATPase superfamily signature 879 891 - -
Gma19g01320 985 PRINTS P-type cation-transporting ATPase superfamily signature 781 792 - -
Gma19g01320 985 PRINTS P-type cation-transporting ATPase superfamily signature 652 666 - -
Gma19g01320 985 PRINTS P-type cation-transporting ATPase superfamily signature 856 875 - -
Gma19g01320 985 ProSiteProfiles Heavy-metal-associated domain profile. 48 114 IPR006121 GO:0046872
Gma19g01320 985 SUPERFAMILY HMA, heavy metal-associated domain 48 118 IPR036163 GO:0046872
Gma19g01320 985 CDD HMA 128 190 IPR006121 GO:0046872
Gma19g01320 985 ProSiteProfiles Heavy-metal-associated domain profile. 200 261 IPR006121 GO:0046872
Gma19g01320 985 CDD P-type_ATPase_Cu-like 290 966 - -
Gma19g01320 985 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 364 965 IPR027256 GO:0006812|GO:0016021|GO:0019829
Gma19g01320 985 ProSitePatterns Heavy-metal-associated domain. 130 159 IPR017969 GO:0046872
Gma19g01320 985 SUPERFAMILY HMA, heavy metal-associated domain 123 194 IPR036163 GO:0046872
Gma19g01320 985 Gene3D - 736 787 IPR023299 GO:0000166
Gma19g01320 985 Gene3D - 659 735 IPR023299 GO:0000166
Gma19g01320 985 PANTHER ATP7, ISOFORM B 1 976 - -
Gma19g01320 985 Pfam haloacid dehalogenase-like hydrolase 648 870 - -
Gma19g01320 985 Pfam E1-E2 ATPase 450 630 - -
Gma19g01320 985 Gene3D - 419 541 - -
Gma19g01320 985 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 1 976 - -
Gma19g01320 985 SUPERFAMILY Calcium ATPase, transmembrane domain M 396 934 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01320 Gma-Chr19 42503701 42508840 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01320 1 985 Primary Pumps ATPases AT1G63440 75.755 0.0 1531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01320 K17686 - gmx:100789164 1883.23