Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01280 ATGGCGCCAAAACGAAAACCTTCGTCTCCAATCTCCATCGGCAACTGCGAGATTACGGTGGAGGCCAACCGCTTCACCTGCAACTCCGATTCAAACGGCGTCGTAATCTCTCTTCCCCGAAGCGGAAAGATCAAAGTGTCTGCAGTGGCTGCAAACCGTGGAAGCGCTTCTGAGGATTTTAGGTCCGGTGATAAAGAACACGAGTTTGTGCTAGTTAATCCTAAAGATGTTGATGCTATTAGCAAATCCTACCTTCAGGAAGTATTACAAATGTATATGACGGAGCTACCTGGAATGAATTATGCTGCAAATACGGGAAAGCAATCAAAGTTTCTTGAGAGATGTGTGACTAATGGGAAATATCGTACACTACTTATCAAATCCACTTCTGTTGGAATTTCAGGAAAGGTTATAGCTGCAATTACATACCAAATCATCCCTGCAGATACAGAATATGCTGAGATCCCACTTGCAGCTGTCAATGCATTCTATCAACGGAAGGGTTTTGGTCATCTATTGTTTCTAGAACTAAGGAAGAGACTCCAAAGTGTTGGTGTTCGTTCTATTTTATGCTGGGGGGACAAAGAATCAGAACGATTTTGGCTTAAACAGGGTTTTGTAGAAATAGCACAGGTGGGTACAAAAGGAAGGGCCCGCAGGTTACCCGTAAAAGCTGATATTCAAAAATCATTATGCTTTCTTGGTGGTTCAACTCTCATGGTTTGCCACCTTGGGAAAGAATTCTTAGCTGACGATGCTAACACTGTGAAGTATCTCCCCTCACAGTTTCATCAGAATTCCTTTGCATCTGTCATTGCTGGAGATGAACAGCTAGAATTTTCAGGAAAGTTACATGTAGATTTGAAATTTCCAGATAAATCTTCCCATAGAATAGAATCAGGTAAAGATCAACATGAAGCTTTGGTGAAAGATGGATCTTCAACAGAATATGACAAACTCAGTGAATTTGACAGTCACAAGGCTAAGGCATGCTGCACTGCCATTGCTCCTTTTGCCAAAATAAATTATAATAGACGGGCCAGTGCAGAAAGTTCACAGGATGGAATTGATGCTAATGTGAAGTATTCTTCTCAATCTACAAAAGGTTCAAAGAGGGCCTGGGAAGCCTCTTTATCTTCATTGAAGTCAAAAAGGGTGAAGGGGAGCCAGATGGTTGACTATCAACAAGATTCTAGCTGCGGTTTTATCTTAGAGACTGATAAGGCCAATCCTTGTTTTGAAGAAGTCCCTCATGATCCTTCAATTACAAAAAGTTCCGAAAAATGTATCGGGGATCATTTGCCATCAACTAAACAAAGCTTTAGAATTATGTTGATGAATATTGCTGATGATACTAAGAAAACACAACTTACAAAGGTGATTGAAGACCTTGGTGGAACTATATCCCATGATGGAAGTATGACCACACACGTTGTCACCGGAAAAGTGAGGAAGACTCTGAATTTCTGTACCGCCCTCTGTTCAGGTGCTTGGGTGATTTCATCAAGTTGGTTAAAAGAAAGTTTTCGTGAAGGCAGATTTGTTGATGAACTGCCTCACATACTGAATGATACAGATTATCTGCTGAAGTACAAATCTGATTTAAAAAGTGCAATTCTCCGGGCAAAAGTTAGCCCTCATGCTTTGTTTAAGGGTTATAATATATGTATTGCAGCTCATGTTCAAACTCCTAAAATATTGTCTGCAATTGTCAGGTCTGCAGGTGGTAATGTTATCAGTGGACTCGAAAAGGTAAACGAATCATCAACAACAATCTTTGTGGCATGCGAAGAAGACACAGAAGAAGCAATGATAGCTGCACAGAAAGGTATATGGACTTTCAGTAGCGAGTGGTTTATGAACTGTGTCATGAGACAAGAGCTTGACTTGGAGGCCTCCCAGTTTGCAGCGTCCTTATAA 1920 0.4099 MAPKRKPSSPISIGNCEITVEANRFTCNSDSNGVVISLPRSGKIKVSAVAANRGSASEDFRSGDKEHEFVLVNPKDVDAISKSYLQEVLQMYMTELPGMNYAANTGKQSKFLERCVTNGKYRTLLIKSTSVGISGKVIAAITYQIIPADTEYAEIPLAAVNAFYQRKGFGHLLFLELRKRLQSVGVRSILCWGDKESERFWLKQGFVEIAQVGTKGRARRLPVKADIQKSLCFLGGSTLMVCHLGKEFLADDANTVKYLPSQFHQNSFASVIAGDEQLEFSGKLHVDLKFPDKSSHRIESGKDQHEALVKDGSSTEYDKLSEFDSHKAKACCTAIAPFAKINYNRRASAESSQDGIDANVKYSSQSTKGSKRAWEASLSSLKSKRVKGSQMVDYQQDSSCGFILETDKANPCFEEVPHDPSITKSSEKCIGDHLPSTKQSFRIMLMNIADDTKKTQLTKVIEDLGGTISHDGSMTTHVVTGKVRKTLNFCTALCSGAWVISSSWLKESFREGRFVDELPHILNDTDYLLKYKSDLKSAILRAKVSPHALFKGYNICIAAHVQTPKILSAIVRSAGGNVISGLEKVNESSTTIFVACEEDTEEAMIAAQKGIWTFSSEWFMNCVMRQELDLEASQFAASL 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01280 639 ProSiteProfiles BRCT domain profile. 439 522 IPR001357 -
Gma19g01280 639 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 4 639 - -
Gma19g01280 639 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 437 520 IPR001357 -
Gma19g01280 639 Pfam BRCA1 C Terminus (BRCT) domain 548 623 IPR001357 -
Gma19g01280 639 Gene3D - 66 219 - -
Gma19g01280 639 SUPERFAMILY BRCT domain 540 628 IPR036420 -
Gma19g01280 639 Pfam Acetyltransferase (GNAT) family 133 206 IPR000182 GO:0016407
Gma19g01280 639 CDD NAT_SF 135 192 - -
Gma19g01280 639 ProSiteProfiles BRCT domain profile. 545 628 IPR001357 -
Gma19g01280 639 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 75 226 IPR000182 GO:0016407
Gma19g01280 639 Gene3D BRCT domain 432 546 IPR036420 -
Gma19g01280 639 Gene3D BRCT domain 547 638 IPR036420 -
Gma19g01280 639 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 69 211 IPR016181 -
Gma19g01280 639 CDD BRCT_PAXIP1_rpt6_like 549 629 - -
Gma19g01280 639 PANTHER N-ACETYLTRANSFERASE 4 639 - -
Gma19g01280 639 SMART BRCT_7 547 626 IPR001357 -
Gma19g01280 639 SMART BRCT_7 435 512 IPR001357 -
Gma19g01280 639 SUPERFAMILY BRCT domain 441 524 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01280 Gma-Chr19 41889074 41895266 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Gma19g01280 RTT107_BRCT_5 1.3e-06 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01280 - - gmx:100819647 1236.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01280 19 41889074 41895266 Gma19g01280 19 41889074 41895266 ECH
Gma19g01280 19 41889074 41895266 Gma03g01227 03 38112789 38119075 GST