Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01266 ATGGTTGCTTTGTTTTCTCCTACTGTGTTCTCAACCAAGGGATGGCTCTTAGAGGAGGAGCCATTAAGCTATGATGTGTCCTCAAAGAACTCATTTCCCTATCAATTTTATTCACTACAGACACAGATTGAGGTTGAAATAGAAAGGTCAACTGCACCATCCCCTGATGACCCTGCCATGGTCAAGAAGCTTAGCCACAACGCTAGTGAACGTGATCGCCGCAAGAAGGTCAATAATCTGGTTTCTTCACTTCGTTTACTTCTTCCAGTGGAAGATCAAACGAAAAAAATGAGTATTCCGGCGACAGTTTCGCGAGTCTTAAAATACATACCTGAGTTGCAACACCAAGTGCAAGCACTAAATAAGAAAAAAGAGGAGCTTCTGTGCAGAATTTCAAAAAATCTCAAAGGAGATTCAGTGAACAAAGAATCTCAAAGGAGAATTTCCCACCACAATTCTGATTTTGTTGTTTCGACTAGTAGGCTCAACGATTGTGAAGCTGTTGTTCACATTTCTTTTTATGAGGCTCACAAGGTTCCACTATCCGAGATCTTGCACTGTTTAGAAAATAATGGCCTTCTTCTGCTAAATGCTTCTTCCTCTGAAACCTTTGGTGGAAGGTTCTTCTACATCTTGCATTTCCAGATTTTAACGGGGTCTGAGAGCCTATGTGAGCTGTCCAATTTTCAAAAAAACGAAGAAAAAATTGGTGGCATGGATTGA 723 0.408 MVALFSPTVFSTKGWLLEEEPLSYDVSSKNSFPYQFYSLQTQIEVEIERSTAPSPDDPAMVKKLSHNASERDRRKKVNNLVSSLRLLLPVEDQTKKMSIPATVSRVLKYIPELQHQVQALNKKKEELLCRISKNLKGDSVNKESQRRISHHNSDFVVSTSRLNDCEAVVHISFYEAHKVPLSEILHCLENNGLLLLNASSSETFGGRFFYILHFQILTGSESLCELSNFQKNEEKIGGMD 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01266 240 SMART finulus 67 119 IPR011598 GO:0046983
Gma19g01266 240 Pfam Helix-loop-helix DNA-binding domain 62 114 IPR011598 GO:0046983
Gma19g01266 240 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 224 - -
Gma19g01266 240 Coils Coil 110 130 - -
Gma19g01266 240 CDD bHLH_AtORG2_like 62 136 - -
Gma19g01266 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 113 IPR011598 GO:0046983
Gma19g01266 240 Gene3D - 56 143 IPR036638 GO:0046983
Gma19g01266 240 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 224 IPR015660 GO:0003700|GO:0006357
Gma19g01266 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 62 132 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01266 Gma-Chr19 41740635 41747739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01266 1 216 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 40.529 4.05e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma19g01266 HLH 2.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01266 - - gmx:100790212 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01266 19 41740635 41747739 Gma03g01212 03 37941536 37943827 GST