Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01252 ATGTCCCTTGAAGAGTCGCTAAGATCTCTTTCTCTGGATTACCTCAACCTCCTCATCAACGGGCAGGCCTTCAGCGACGTCACTTTCAGCGTGGAGGGCCGTCTGGTCCACGCGCACCGCTGCATACTCGCGGCGAGGAGTCTCTTCTTCAGAAAATTCTTTTGTGGGCCGGACCCACCTTCCGGCCTCGACCCCACCGGACCGCGAGGAGTTAACTCCTCGCGATCCGGAGGGGTCATCCCAGTCAACTCGGTTGGCTACGAGGTCTTTCTCCTCATGCTCCAGTTTCTATACAGTGGCCAAGTCTCCATCGTGCCTCAGAAGCACGAGGCCAGGCCCAATTGCGGCGAGCGGGGATGCTGGCACACGCATTGCACCTCCGCCGTCGATCTCGCCCTCGACACCCTCGCCGCCGCTAGATACTTCGGGGTCGAACAGCTCGCATTACTCACTCAGAAACAACTGGCGAGCATGGTAGAGAAGGCTTCAATAGAGGATGTAATGAAAGTGCTGTTGGCATCAAGAAAGCAAGACATGCAGCAACTATGGGCAACATGTTCCCACTTGGTGGCAAAATCAGGTCTTCCTCCAGAGGTTCTAGCAAAGCACTTACCAATAGACATTGTGGCGAAAATCGAAGAGCTCCGTCTCAAATCCTCCCTGGCACGCCGCTCATTGGTGCCTTCTcaccaccaccatcaccaccaccaccaccaccacGCGGCGGCGGCACTCGACCTCGAGGACCAGAAAATCCGGCGAATGAGGCGCGCCCTGGACTCCTCCGACGTTGAACTGGTGAAGCTAATGCTAATGGGAGAAGGCCTAAACCTCGACGAGGCTTTGGCCTTACCCTACGCAGTGGAGAATTGCAGCAGAGAAGTGGTGAAGGCCTTACTGGAGCTTGGTGCAGCCGACGTTAACTACCCGTCGGGTCCCGCCGGGAAGACGCCGCTCCACATTGCGGCGGAGATGGTGTCCCCCGATATGGTGGCGGTGCTTCTTGACCACCACGCGGACCCCAACGTCAGAACTGTCGATGGGGTCACCCCTCTAGACATCCTCAGAACCCTAACCTCGGATTTCCTCTTCAAGGGTGCTGTCCCCGGATTGACCCACATCGAGCCCAACAAGCTGAGGCTGTGCTTGGAGCTTGTTCAATCCGCGGCTCTCGTCATGTCGCGAGAAGATGGCAATAACGCCAACAACAACAACAACAATGCTACTAATAATTCAGCAGCACCCATTTACCCTCCACCAATGAACGAGGATCAcaacaacaacagcagcagcagcagtggcaacaacaacaacaacaacattggtaaccTTAACTTGGATTCGAGGTTGGTGTATCTCAACCTTGGTGCCACCGCTTCAATGAGTTCAAGGTTGGATAATGCTGAGGACGAGAGAGAAGCCATGAACCAAACCATagggagaaggaggagaattgatgaatatggAGGGACCCTATTGGATTTGGATGATGGATGGAGCGTAAAAGACTCTTCTTTTGTCACTTGGAAGAATAGACTGTTTTTCTGTGAAACGAATGGGTGCATGGAGGAGACGCAGGTCAATCTTTTCAAATCCTCCTTCACCTGTCAACTCCTTAATTTGTATTTACTGATCCGTAGCTAA 1644 0.5 MSLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPTGPRGVNSSRSGGVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEARPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQDMQQLWATCSHLVAKSGLPPEVLAKHLPIDIVAKIEELRLKSSLARRSLVPSHHHHHHHHHHHAAAALDLEDQKIRRMRRALDSSDVELVKLMLMGEGLNLDEALALPYAVENCSREVVKALLELGAADVNYPSGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVMSREDGNNANNNNNNATNNSAAPIYPPPMNEDHNNNSSSSSGNNNNNNIGNLNLDSRLVYLNLGATASMSSRLDNAEDEREAMNQTIGRRRRIDEYGGTLLDLDDGWSVKDSSFVTWKNRLFFCETNGCMEETQVNLFKSSFTCQLLNLYLLIRS 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01252 547 PANTHER REGULATORY PROTEIN NPR5 1 475 - -
Gma19g01252 547 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 475 IPR044284 GO:0099402
Gma19g01252 547 ProSiteProfiles BTB domain profile. 25 106 IPR000210 GO:0005515
Gma19g01252 547 SMART ANK_2a 314 343 IPR002110 GO:0005515
Gma19g01252 547 SMART ANK_2a 279 309 IPR002110 GO:0005515
Gma19g01252 547 MobiDBLite consensus disorder prediction 396 440 - -
Gma19g01252 547 Coils Coil 458 478 - -
Gma19g01252 547 Pfam Ankyrin repeats (3 copies) 262 344 IPR002110 GO:0005515
Gma19g01252 547 ProSiteProfiles Ankyrin repeat profile. 314 346 IPR002110 GO:0005515
Gma19g01252 547 SMART BTB_4 25 159 IPR000210 GO:0005515
Gma19g01252 547 Pfam BTB/POZ domain 16 108 IPR000210 GO:0005515
Gma19g01252 547 SUPERFAMILY POZ domain 9 157 IPR011333 -
Gma19g01252 547 CDD BTB_POZ_NPR_plant 8 159 - -
Gma19g01252 547 ProSiteProfiles Ankyrin repeat region circular profile. 314 344 - -
Gma19g01252 547 Pfam Domain of unknown function (DUF3420) 194 256 IPR024228 -
Gma19g01252 547 Gene3D - 245 362 IPR036770 -
Gma19g01252 547 Gene3D Potassium Channel Kv1.1; Chain A 3 192 IPR011333 -
Gma19g01252 547 SUPERFAMILY Ankyrin repeat 273 357 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01252 Gma-Chr19 41539176 41542411 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gma19g01252 BTB 1e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01252 K14508 - gmx:100816086 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01252 19 41539176 41542411 Gma03g01198 03 37760647 37763331 GST